Halodesulfurarchaeum formicicum HTSR1: HTSR_0058
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Entry
HTSR_0058 CDS
T04517
Name
(GenBank) phosphoesterase RecJ domain-containing protein
KO
K07462
single-stranded-DNA-specific exonuclease [EC:3.1.-.-]
Organism
halh
Halodesulfurarchaeum formicicum HTSR1
Pathway
halh03410
Base excision repair
halh03430
Mismatch repair
halh03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
halh00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
HTSR_0058
03430 Mismatch repair
HTSR_0058
03440 Homologous recombination
HTSR_0058
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
halh03400
]
HTSR_0058
DNA repair and recombination proteins [BR:
halh03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
RecJ
HTSR_0058
DSBR (double strand breaks repair)
HR (homologous recombination)
RecFOR pathway proteins
HTSR_0058
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
HTSR_0058
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DHH_CID
DHHA1
DHH
Motif
Other DBs
NCBI-ProteinID:
AOW79268
UniProt:
A0A1D8S1N8
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All DBs
Position
complement(61168..62589)
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AA seq
473 aa
AA seq
DB search
MDPPVPALHDRAVAAADRLLAAESVRVVSHDDADGLTSAAIATTALERAGLAVDVAIKHG
LDEAAIDDLATTGGTVLFTDLGSGGLDRLAELADTGSFTPVVADHHEPADGSIEHHLNPH
CVGLDGGRELAGAGTAYVLARTVLDRAGVDEPDPRELAALAVVGAVGDRQTVDGELVGAN
AAVAADGEAVGVIESGTDLAIYGTQTRPLPKLLEYTTDVRIPGITGNRQGAIRFLEDLDV
ELRTEAGWPTWADLGPEKRTQVASALLTRAVERGVPAERIDALVGTSYILPREEPGTQLR
DASEFATLLNATARYEESEIGLAVCRGDRDGALDRAETLLKNHRRNISAGIESLAETGTT
EAEHLQWVHAGEQIRATIVGIVAGMALGEGDIDRHTPIVAFANKPDGGVKVSARANGRLG
DRGLNLGTALREAATTVGGEGGGHAMAAGATIPEGTEATFVSALDERIGAQLN
NT seq
1422 nt
NT seq
+upstream
nt +downstream
nt
atggatccgccggtcccagcactccacgaccgggccgtggccgccgccgatcggctgctc
gcggccgagtcagtccgggtagtctctcatgacgacgccgacggcctgacgagcgcggca
atcgctacgacggccctcgaacgggccgggctggctgtcgacgtggctatcaaacacggg
ctcgacgaggcggcgatcgacgatctggccacgactggtgggaccgtcctgttcaccgat
ctggggagcggcgggctcgatcgactcgccgaactcgccgatacggggtcgttcacgcct
gtcgtcgccgaccaccacgagccggcagacgggtcgatcgaacaccatctcaacccgcac
tgtgtcgggctcgacggagggcgggaactcgccggggccgggacggcgtatgtcctcgcc
cgaaccgtcctggatcgggctggagtcgacgagccggacccacgcgagctggcggcactg
gccgtcgtgggagccgtcggggaccgccagaccgtcgacggcgaactcgtgggggcaaac
gccgccgtcgctgccgacggggaggctgtcggcgtcatcgagagtgggaccgacctcgcg
atctacggcacgcagacccgcccgctgcccaaactgctggagtacaccacggacgttcga
atccccggaatcactggaaaccggcagggcgcgattagatttctggaggatctggacgtg
gagttacgaaccgaggcgggctggccgacctgggcggatctcgggcctgagaaacggaca
caggtcgcaagcgcactgctcacccgggccgtcgagcgcggcgtgcccgcggagcgaatc
gatgcgctggtcgggaccagttacatcctgccccgggaggagccgggaacccagctccgg
gacgcaagcgagttcgccacgctgctgaacgcgacggcccgctacgaggaaagcgagatc
gggctggccgtctgccggggggatcgggatggcgcactcgatcgggccgaaacgcttctc
aagaaccaccggcggaacatctccgcggggatcgagtccctcgccgagactggcacgacc
gaggcagaacacctccagtgggtccacgccggcgagcagatccgggcgacgatcgtcggc
atcgtggccgggatggccctgggcgagggcgacatcgaccggcacacgcccatcgtcgcc
ttcgcgaacaagcccgacggcggcgtcaaggtctccgccagggcgaacggccggctcggc
gatcgggggctgaatctcgggacggccctgcgcgaggccgccacaaccgtcgggggagag
ggtgggggtcacgcgatggctgccggtgcgacaattcccgaagggacagaagcgacgttc
gtcagcgccctcgacgagcggatcggcgcacaactgaactag
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