Halodesulfurarchaeum formicicum HTSR1: HTSR_1080
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Entry
HTSR_1080 CDS
T04517
Symbol
rad
Name
(GenBank) flap endonuclease-1
KO
K04799
flap endonuclease-1 [EC:3.1.-.-]
Organism
halh
Halodesulfurarchaeum formicicum HTSR1
Pathway
halh03030
DNA replication
halh03410
Base excision repair
Brite
KEGG Orthology (KO) [BR:
halh00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
HTSR_1080 (rad)
03410 Base excision repair
HTSR_1080 (rad)
03450 Non-homologous end-joining
HTSR_1080 (rad)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
halh03032
]
HTSR_1080 (rad)
03400 DNA repair and recombination proteins [BR:
halh03400
]
HTSR_1080 (rad)
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
halh04147
]
HTSR_1080 (rad)
DNA replication proteins [BR:
halh03032
]
Eukaryotic type
DNA Replication Elongation Factors
Other elongation factors
HTSR_1080 (rad)
Prokaryotic type
Elongation factors (archaeal)
Other elongation factors
HTSR_1080 (rad)
DNA repair and recombination proteins [BR:
halh03400
]
Eukaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
Long Patch-BER factors
HTSR_1080 (rad)
Exosome [BR:
halh04147
]
Exosomal proteins
Exosomal proteins of haemopoietic cells (B-cell, T-cell, DC-cell, reticulocyte, and mast cell)
HTSR_1080 (rad)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
XPG_I
XPG_N
5_3_exonuc
OrfB_IS605
SOAR
Motif
Other DBs
NCBI-ProteinID:
AOW80261
UniProt:
A0A1D8S4I1
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All DBs
Position
complement(1024195..1025178)
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AA seq
327 aa
AA seq
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MGLADLRQLAVLSEVGYEDLDGDVVAVDAHNWLYRYLTTTVKFTRDSVYTTGAGEEVANL
IGVVQGLPKFFEHDLTPVFVFDGGVTELKTEEVTRRREKREEAEKRMEAAREAGEQIKAA
RLESRTQRLTDVIHRTTRDLLEHLDIPIVEAPAEGEAQAAAMARNDPDVDYAGSEDYDTL
LLGAPYTLRKLTTSDDPELMDFEATLAEHDITWSQLVDIGILCGTDFNEGLRGYGPKTAL
SAVKEHGDLWGVLEAEDEYIEYADQIRDLFLDPDVTTEYDLDLSIDPDIDAARAYVSETW
EIPPEEVARGFERIEDSVAQTGLDQFT
NT seq
984 nt
NT seq
+upstream
nt +downstream
nt
atggggctcgcagatctcagacagctggcggtgctctcggaggtgggctacgaggacctg
gacggagacgtagtggccgtcgacgcgcacaactggctctaccgctatctcacgaccacg
gtgaagttcacccgtgattcggtctacacgacgggtgcgggcgaggaagtcgccaacctc
atcggggtcgtccagggactgccgaagttcttcgaacacgatctgacgccggtcttcgtc
ttcgacggcggcgtcactgagctcaagaccgaggaggtgacacgtcgacgcgagaaacgc
gaagaagccgaaaagcgaatggaggcggccagggaggccggcgagcaaatcaaagccgcg
agactggagtcacgaacccagcggctgaccgacgtgatccaccggacgacacgcgacctc
ctcgagcatctcgacatcccgatcgtcgaggccccggccgagggcgaagcccaggccgcc
gcgatggcccgaaacgatcccgacgtggactacgccgggagcgaggactacgacacgctc
ctcctgggggccccctatacgctccgtaagctcaccaccagtgacgacccggagctcatg
gacttcgaagcgaccctcgcggaacacgacatcacgtggtcccaactggtcgatatcggc
atcctctgcgggacggacttcaacgagggccttcggggatacggcccgaagacggccctc
agtgcggtcaaggaacacggcgatctctggggcgtgcttgaggccgaggacgaatacatc
gagtatgccgatcagatccgggacctgttcctcgacccggacgtgacgaccgagtacgac
ctcgacctctcgatcgatccggatatcgacgccgccagggcctacgtcagcgaaacctgg
gagatcccacccgaggaggtcgcccggggcttcgagcggatcgaagattcggtcgcccag
accgggctcgatcaatttacgtaa
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