Halodesulfurarchaeum formicicum HTSR1: HTSR_1139
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Entry
HTSR_1139 CDS
T04517
Symbol
tfbB
Name
(GenBank) transcription initiation factor IIB
KO
K03124
transcription initiation factor TFIIB
Organism
halh
Halodesulfurarchaeum formicicum HTSR1
Pathway
halh03022
Basal transcription factors
Brite
KEGG Orthology (KO) [BR:
halh00001
]
09120 Genetic Information Processing
09121 Transcription
03022 Basal transcription factors
HTSR_1139 (tfbB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
halh03021
]
HTSR_1139 (tfbB)
Transcription machinery [BR:
halh03021
]
Eukaryotic type
RNA polymerase II system
Basal transcription factors
TFIIB
HTSR_1139 (tfbB)
Prokaryotic type
Archaeal type
TFB
HTSR_1139 (tfbB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TFIIB
Zn_Ribbon_TF
Cyclin_C
Trm112p
Zn_ribbon_tTFIIB
DZR
HTH_Tnp_ISL3
Cyclin_N
BRF2-like_C_cyclin_rpt
DZR_2
YopD
HTH_24
HTH_Mga
HTH_AsnC-type
Zn_ribbon_LysW
DUF8054_C
DUF7575
A2L_zn_ribbon
Motif
Other DBs
NCBI-ProteinID:
AOW80319
UniProt:
A0A1D8S4N6
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All DBs
Position
1078061..1079050
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AA seq
329 aa
AA seq
DB search
MSDATIRTYSGERQRTRVDESESETETEESVDEHVCPECGGRLDTDEERGETVCSECGLV
VEENEIDRGPEWRAFDAAEKDQKSRVGAPTTNMMHDKGLSTNIGWQDKDAYGRALSSRQR
QKMQRLRTWNERFRTRNSKERNLKQALGEIERMSSALGLPQEVRETASVIYRRALEEDLL
PGRSIEGVATASLYAAARQMSTPRSLDEMANVSRIDEMEFKRTYRYIVRELSLEVQPADP
ASYVPRFASELDLADEVERRARQLLTTAQEKGVTSGKSPVGLAAAAIYAASLLTNRRVTQ
SEVSEVTNVSEVTIRNRYQELLEAADVPA
NT seq
990 nt
NT seq
+upstream
nt +downstream
nt
atgagtgatgccacaatccgaacctatagcggcgagcggcagcgaacacgggtagacgaa
tcggaatcggaaacagaaacagaggagtccgtcgacgagcacgtctgtccagagtgtggc
ggacgactcgacacggacgaggagcgcggcgagaccgtctgctcggagtgcggactggtc
gtcgaggaaaacgaaatcgatcgcggtcccgaatggcgagccttcgacgccgccgagaag
gaccagaagtcccgcgtgggcgcccccacgacgaacatgatgcacgacaaggggctctcc
acgaacatcggctggcaggacaaggacgcctacgggcgggcactctcctcgcgccagcgc
cagaagatgcagcggttgcgcacctggaacgagcggttccgcacccggaactcgaaggag
cgcaacctcaaacaggccctgggcgagatcgaacgcatgagctccgcgctcgggcttccc
caggaagtacgggagacggcttccgtgatttaccgccgagcgcttgaggaggacttgctc
cccggccgctccatcgagggtgtcgccacggcgtcgctttacgccgcggcccgccagatg
tcaacgccccggagcctggacgagatggccaacgtgagccggatcgacgagatggagttc
aagcgcacctaccgctacatcgtccgggaactcagtctggaggtccagccggccgacccc
gcgagctacgtgccccggttcgcctcggaactcgacctcgccgatgaggtcgagcgacgg
gctcgccagctactcacgacagcccaggaaaagggcgtcacgagcggcaagagcccggtg
ggcctggccgccgcggcgatctacgcggcgtccctgttgaccaaccgccgagtcacccag
agcgaggtcagcgaggtcacgaacgtttccgaggtaaccatccgaaatcggtaccaggaa
ctgctcgaagccgcggacgtccctgcctaa
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