Halodesulfurarchaeum formicicum HTSR1: HTSR_1601
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Entry
HTSR_1601 CDS
T04517
Symbol
uvrD
Name
(GenBank) UvrD/REP helicase
KO
K03657
ATP-dependent DNA helicase UvrD/PcrA [EC:
5.6.2.4
]
Organism
halh
Halodesulfurarchaeum formicicum HTSR1
Pathway
halh03420
Nucleotide excision repair
halh03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
halh00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
HTSR_1601 (uvrD)
03430 Mismatch repair
HTSR_1601 (uvrD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
halh03400
]
HTSR_1601 (uvrD)
Enzymes [BR:
halh01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
HTSR_1601 (uvrD)
DNA repair and recombination proteins [BR:
halh03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
GGR (global genome repair) factors
HTSR_1601 (uvrD)
MMR (mismatch excision repair)
Other MMR factors
HTSR_1601 (uvrD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrD-helicase
AAA_19
UvrD_C
UvrD_C_2
AAA_30
AAA_22
AAA_11
Herpes_ori_bp
AAA_12
STALD
AAA_25
Motif
Other DBs
NCBI-ProteinID:
AOW80773
UniProt:
A0A1D8S622
LinkDB
All DBs
Position
complement(1522645..1524480)
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AA seq
611 aa
AA seq
DB search
MMTDTEPVVTRLFGGPGSGKTTALLDRVEDLLDRDGVTMRDVLVVSYTRAAAAEVRERLA
ERLDENPRALKGNVSTMHAKAYDLLNLSRGDVVGESEKEEFCEDYGIPYEDEYASGSRRT
ARSTTLGNKIIATSQWLQRTQREVADWYDIPFQWNDEEVRLPPDIDPNAQVGNKYTPTWP
SSDDRVDVPEAIRAWRAYKGEHGLVGFADMLERVAERSLLPNVDHLVIDEFQDITQLQYA
VYDEWKPHMDTVFIAGDDDQVVYAWQGADPKLLLEEQGEDVILENSYRLPSNVLEVVQQE
IEHIDERQEKDLNPRTEGGSVEAVESPSVLDLVRNVRRTVETGEDETVMVLFRARYQLFD
FVEEFIDEGIPFRALTDQRLWTDRLTDYVRAIEALDRDEPIDGLQARRLVDMLQASAFGT
GDRNDMRDELDEREEAADVEDIRKLEIEPDVVRDYAPFVPAPAAAADMLRKVTRYQRQSI
DAYFHGDYGGADPNRVRVGTIHSAKGREADHVFVATDLTEKVVEQMAASVGDDLPEDLEF
PKRGGTVPYLTDNERRVFYVGMSRARNRLVLLQNLIDGAPTLPIDVLLHGEPTGETLADS
VEAKSQVSLIQ
NT seq
1836 nt
NT seq
+upstream
nt +downstream
nt
gtgatgaccgacacggagccggtggtcacccgtctcttcgggggccccgggagcggcaag
acgacggcactcctcgatcgcgtcgaggacttactcgaccgggacggcgtgacgatgcgg
gacgttctggtcgtctcgtacacgcgagcggccgccgcggaggttcgcgagcggttggcc
gaacgcctcgatgagaatccccgggcgttgaaggggaacgtctccacgatgcacgcgaaa
gcctatgacctcctcaacctctcgcgaggggacgtcgtgggcgaatccgagaaggaggag
ttctgtgaggactatggcattccctacgaggacgagtacgcctcgggctcccggcgaacg
gcccgctcgaccacgcttggcaacaagatcatcgcgaccagccagtggctccagcgaacc
cagcgggaggttgcggactggtatgacattcccttccagtggaacgacgaggaggttcgt
ctcccgcccgacatcgaccccaacgcgcaggtcggcaacaagtacactccgacctggccc
agttccgatgaccgcgtggacgtcccggaagcgatccgtgcctggcgggcctacaagggc
gaacacggcctggtcggcttcgccgacatgctcgaacgggtcgccgagcgctcgcttctg
cccaacgtcgaccacctggtgatcgacgaatttcaggacatcacccagctccagtacgcg
gtctacgacgagtggaaaccccacatggacaccgtcttcatcgccggggacgacgaccag
gtcgtctacgcctggcagggcgcggacccgaaactcctcctcgaagaacagggcgaggac
gtcattctggagaactcctaccggcttccctcaaacgtgctggaagtcgttcaacaggag
atcgaacacatcgacgagcgccaggagaaggacctgaacccccggaccgagggcggctcg
gtcgaggccgtggagagtccctccgtgctcgatctggttcggaacgttcgccgcacggtc
gagaccggcgaggacgagacggtgatggtcctcttccgggcccgctaccagctctttgac
ttcgtcgaggagtttatcgacgagggcatccccttccgggcgctcaccgaccagcggctc
tggaccgaccgactcaccgactacgtccgggccatcgaggccctggaccgagacgagccg
atcgacggcctgcaggctcgccgactggtggatatgctgcaggcctcggcgtttggcacc
ggcgaccgcaacgacatgcgtgacgaactcgacgagcgtgaggaggccgccgatgtcgag
gacatccggaaattagagatcgaaccggacgtggtgcgagactacgcgcccttcgttccg
gccccggccgccgcggcggacatgctgcggaaagtcacccgctatcagcgccagtccatc
gacgcgtacttccacggagattacggtggggccgaccccaaccgggtccgggtcggcacg
attcacagcgccaagggccgcgaggccgatcacgtcttcgtggcgaccgacctcaccgag
aaagtcgtcgaacagatggccgcgtccgtcggcgacgacctcccggaggacctggaattc
cccaagcgtggcggtaccgtcccgtatctcacggacaacgagcgccgcgtgttctacgtc
gggatgagccgggcccgaaaccgactggtcctccttcagaacctgatcgacggggccccg
accctgccgatcgacgtcctgctccacggcgagccaacgggcgaaaccctggcggactca
gtcgaggccaaaagccaggtctcgctgatccagtag
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