Halodesulfurarchaeum formicicum HTSR1: HTSR_1916
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Entry
HTSR_1916 CDS
T04517
Symbol
rpoE2
Name
(GenBank) DNA-directed RNA polymerase subunit E''
KO
K15171
transcription elongation factor SPT4
Organism
halh
Halodesulfurarchaeum formicicum HTSR1
Pathway
halh03250
Viral life cycle - HIV-1
Brite
KEGG Orthology (KO) [BR:
halh00001
]
09120 Genetic Information Processing
09125 Information processing in viruses
03250 Viral life cycle - HIV-1
HTSR_1916 (rpoE2)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
halh03021
]
HTSR_1916 (rpoE2)
03019 Messenger RNA biogenesis [BR:
halh03019
]
HTSR_1916 (rpoE2)
Transcription machinery [BR:
halh03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription elongation factors
HTSR_1916 (rpoE2)
RNA polymerase I system
HTSR_1916 (rpoE2)
Messenger RNA biogenesis [BR:
halh03019
]
Eukaryotic type
mRNA processing factors
3' end processing
DRB sensitivity inducing factor (DSIF) complex
HTSR_1916 (rpoE2)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Spt4
Zn_ribbon_3
Zn_Ribbon_1
DZR
HypA
UPF0547
Zn_ribbon_15
Zn_ribbon_IS1595
DUF7129
Zn_ribbon_NOB1
DZR_2
zf-RING_4
Zn_ribbon_8
Zn_Ribbon_TF
NRDD
zf-ChsH2
Motif
Other DBs
NCBI-ProteinID:
AOW81080
UniProt:
A0A1D8S6U7
LinkDB
All DBs
Position
1835866..1836063
Genome browser
AA seq
65 aa
AA seq
DB search
MASKRLACRECHHIVSADQNACPHCGSSSLTEDWAGYVVITHPEQSEIAEKMEVTEPGEY
ALKVR
NT seq
198 nt
NT seq
+upstream
nt +downstream
nt
atggcctcgaaacggcttgcgtgccgggagtgtcaccacatcgtctcggccgaccagaac
gcctgcccccactgtggctcttccagcctcaccgaggactgggcgggctacgtggtcatc
acccaccccgagcaaagcgagatcgccgagaagatggaagtgaccgaaccgggcgaatac
gcgctgaaagtccgctaa
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