Haloarcula sp. JP-L23: G9465_13090
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Entry
G9465_13090 CDS
T06489
Name
(GenBank) RtcB family protein
KO
K14415
tRNA-splicing ligase RtcB (3'-phosphate/5'-hydroxy nucleic acid ligase) [EC:
6.5.1.8
]
Organism
halj
Haloarcula sp. JP-L23
Brite
KEGG Orthology (KO) [BR:
halj00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
halj03016
]
G9465_13090
Enzymes [BR:
halj01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.8 3'-phosphate/5'-hydroxy nucleic acid ligase
G9465_13090
Transfer RNA biogenesis [BR:
halj03016
]
Eukaryotic type
tRNA spricing factors
tRNA splicing ligase complex
G9465_13090
Prokaryotic type
tRNA splicing ligases
G9465_13090
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RtcB
Motif
Other DBs
NCBI-ProteinID:
QIO23236
LinkDB
All DBs
Position
complement(2534308..2535762)
Genome browser
AA seq
484 aa
AA seq
DB search
MVTYDTGSVTLERVREYVWEIPPTDGMRVPARVLASEQLLDEISDDKTLEQLQNSAHLPG
VQKYTLCMPDGHQGYGFPVGGVAGIDTEDGCISPGAVGYDINCGVRMLTTPLEYADVQGH
ETELVDRLFAAVPSGLGGGGVYEGSVEDVDAILERGMDWALEQGYATEADLEHCEDEGYR
PEGDASVVSEKAKNRGKEQVGSLGSGNHFLEVQRVTDVYREDVATEFGLSPDQIVVLIHC
GSRGLGHQVCTDYLRKIEKRHGDLLAQLPDKELAAAPAGSQLADEYYRAMCAAINFAWVN
RQLVMHRTRDVFTDVFDVDREDLELLYDVAHNIAKKEVHDVDGEDRELYVHRKGATRAFP
AGRPELPPAYADVGQPVIIPGSMGAGSYVLRGGENSLAETFGSTAHGAGRLMSRTQAKQE
YWGEDVRDDLRDHQHVYVKAQSGATVAEEAPGVYKDVDEVVRVSDALGIGDRVARTFPVC
NIKG
NT seq
1455 nt
NT seq
+upstream
nt +downstream
nt
atggtgacatacgacaccggttcggtcacgctcgaacgggtccgggagtacgtctgggag
attccgccgacagacgggatgcgcgtgccggcgcgggttctcgcgagcgagcagttgctg
gacgagattagcgacgacaagacgctcgaacagttgcagaactccgcacacctccccggc
gtgcagaagtacacgctgtgtatgcccgacggccatcaggggtacggcttccccgtcggc
ggcgtcgcgggcatcgacaccgaggacggctgtatctcgcccggtgcggtgggctacgac
atcaactgcggcgtccggatgctgacgacgccactcgaatacgccgacgtacagggtcac
gagacggaactcgtcgaccgcctgttcgcggccgttccctctggactgggcggcggcggc
gtctacgaggggtccgtcgaggacgtcgacgctatcctcgaacgcgggatggactgggcg
ctggaacagggctacgccaccgaggccgacctcgaacactgcgaagacgaggggtaccgc
cccgagggcgacgccagcgtcgtctcggagaaggcgaagaaccgggggaaagaacaggtc
gggtcgctgggctctggcaaccacttcctcgaagtccagcgcgtcacggacgtctaccgc
gaggacgtggcgacggagttcggtctctcgccggaccagatcgtcgtcctcatccactgt
ggctcgcggggcctcggccatcaggtgtgtacggattacctccggaaaatcgagaagcgc
cacggcgacttgctcgcccagttgccggacaaggaactcgccgcggcgcccgcggggtca
caactggccgacgagtactaccgggcgatgtgcgcggccatcaacttcgcgtgggtgaac
cgccaactcgtcatgcaccggacgcgggacgtcttcaccgacgtgttcgacgtcgaccgg
gaggacctcgaactgctgtacgacgtggcgcacaacatcgcgaagaaggaggtccacgac
gtggacggtgaggaccgcgaactgtacgtccaccggaagggggcgacccgggcgttcccc
gctggtcggccggaactcccgccggcctacgccgacgtgggccaacccgtcatcatcccc
gggagcatgggcgccgggtcgtacgtcctccgcggcggcgagaactcgctggcggagacg
ttcgggtcgacggcccacggtgccggacggctaatgagcaggacgcaggccaaacaggag
tactggggcgaggacgtgcgcgacgacctgcgcgaccaccagcacgtctacgtcaaagcg
cagtcgggggcgacggtggccgaggaggcacccggcgtctacaaagacgtcgacgaagtc
gtccgggtgtcggacgcgctgggaatcggtgaccgcgtcgcgcgaaccttccccgtctgc
aacatcaagggctga
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