Haloarcula sp. JP-L23: G9465_13450
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Entry
G9465_13450 CDS
T06489
Name
(GenBank) ribonuclease J
KO
K12574
ribonuclease J [EC:3.1.-.-]
Organism
halj
Haloarcula sp. JP-L23
Pathway
halj03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
halj00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
G9465_13450
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
halj03019
]
G9465_13450
Messenger RNA biogenesis [BR:
halj03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
G9465_13450
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_J_b_CASP
Lactamase_B_2
Lactamase_B
RMMBL
DUF6233
Motif
Other DBs
NCBI-ProteinID:
QIO23302
LinkDB
All DBs
Position
complement(2594999..2596345)
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AA seq
448 aa
AA seq
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MEVEIATIGGYEAVGRQMTAVRAGDDVVIFDMGLNLSKVLIHDNVETERMHSLDLIDMGA
IPDDRVMSDLEGDVKAIVPTHGHLDHIGAISKLAHRYDAPIVATPFTIELVKQQIKGEEK
FGVQNDLVKMSAGETMQIGERNELEFVNVTHSIIDAINPVLHTPEGSVVYGLDKRMDHTP
VIGDPIDMKRFREIGREGEGVLCYIEDCTNAGRKGRTASEAVARRHLKDVMTSIEDYDGG
IVATTFSSHIARVKSLVEFADDIGRQPVLLGRSMEKYSGTAERLDFVDFPEDLGMYGHRK
SVDRTFKRIMNEGKENFLPIVTGHQGEPRAMLTRMGRGETPYELDNGDKVIFSARVIPEP
TNEGQRYQSEKLLGMQGARIYDDIHVSGHLRQEGHYEMLDALQPQHVIPAHQSLEGFAPY
VDLAENQGYKVGRDLHITRNGNMIQLTE
NT seq
1347 nt
NT seq
+upstream
nt +downstream
nt
atggaagtcgaaatcgcaacaatcggcggatacgaggcagttggccgtcagatgacggcc
gtccgtgcaggtgacgacgtcgtcatcttcgacatgggcctgaacctctcgaaggtactg
attcacgacaacgtcgagaccgagcggatgcactcgctcgatctcatcgacatgggcgct
atcccggacgaccgggtcatgtccgacctcgaaggtgacgtgaaggccatcgtgccgaca
cacggccacctcgaccacatcggcgccatctcgaaactcgcccatcgctacgacgcgcct
atcgtcgccacgcccttcaccatcgaactggtcaaacagcagataaagggcgaggagaag
ttcggggtccagaacgacctcgtcaagatgagcgcgggcgagacgatgcagatcggcgag
cgaaacgaactcgagttcgtcaacgtcacccactccatcatcgacgccatcaacccggtc
ctccacacgccggaagggtccgtcgtctacggactggacaagcggatggaccacacgccg
gtcatcggcgaccctatcgacatgaagcggttccgagagatcggccgcgagggtgagggc
gtcctctgttacatcgaggactgtacgaacgccggccggaagggccgtacggcctccgag
gcagtcgctcgtcgccacctcaaggacgtcatgaccagcatcgaggactacgacggcggc
atcgtcgccacgacgttctcctcgcacatcgctcgtgtgaagagcctcgtcgagttcgcc
gacgacatcggccgccagcccgtgctgctcggtcgctcgatggagaagtactccggcacc
gcagagcgactggacttcgtggacttcccggaggacctcgggatgtacggccaccgcaag
tccgtcgaccgcacgttcaagcggatcatgaacgaaggcaaggagaacttcctgcccatc
gtcacgggccatcagggcgaaccgcgcgcgatgctcacccgcatgggccgcggcgaaacg
ccctacgagctagataacggcgacaaggtcatcttctcggctcgggtcatcccggaaccg
accaacgagggtcagcgctaccagtccgagaaactgctgggcatgcagggcgcccgcatc
tacgacgacatccacgtctcgggccacctccgtcaggagggccactacgagatgctcgac
gcgctccagccccagcacgtcatcccggcccaccagagtctcgaagggttcgcgccgtac
gtggacctcgccgagaatcagggctacaaggtcggccgcgacctgcacatcacgcgtaac
ggcaacatgattcagctcacggaataa
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