Vreelandella alkaliphila: CUU95_01610
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Entry
CUU95_01610 CDS
T05720
Name
(GenBank) RNA helicase
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
halk
Vreelandella alkaliphila
Pathway
halk03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
halk00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
CUU95_01610
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
halk03019
]
CUU95_01610
03009 Ribosome biogenesis [BR:
halk03009
]
CUU95_01610
Enzymes [BR:
halk01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
CUU95_01610
Messenger RNA biogenesis [BR:
halk03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
CUU95_01610
Ribosome biogenesis [BR:
halk03009
]
Prokaryotic type
rRNA helicases
CUU95_01610
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DbpA
ResIII
CMS1
AAA_30
Motif
Other DBs
NCBI-ProteinID:
AYF32597
UniProt:
A0AAJ2VRZ4
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All DBs
Position
complement(335274..336986)
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AA seq
570 aa
AA seq
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MTSTSVASPSFGDLALLPAVLSAVEAQGYEIPSPIQAQTIPALLEGRDMLGQAQTGTGKT
AAFALPLLSRLELTRREPQVLVMAPTRELAQQVAASFSKYGQNLKGLEVAILCGGQEYRE
QLGALKRGAQVIVGTPGRIIDHLDRGSLKLDGLSALVLDEADEMLRMGFIDDVKRVVADT
PKDAQRVFFSATLPTEIERIVNRYLVNPVKVAIESRTTTGENIEQRIVRVDGGAKLEAVA
RILEVEPVDAAIVFVRTRAACTTLVEQLTARGVNAAGLSGDLDQSLRERTITRLKRGKVD
VLIATDVAARGLDVPRITHVINYDLPQDAEAYTHRIGRTGRAGRSGIAITFAGFREGRKV
GWMEQATGQKMTEMPLPDEAAIRAHRDDVFHHRVVAALTKGAEEQRALVERLVEEGHDAV
ELACAFAAMARADEAPIGRLQAPRKERTTRDSAPGGKPGGRRERSSAPSEGMIRYRVSVG
HKDGVKPGQLVGALANEGGIEGARIGRIDIRNAFSVVELPSGLPSTILAKMARARVAGRP
LEISEDSAPERAPRRRRDDGDAPVRRRERA
NT seq
1713 nt
NT seq
+upstream
nt +downstream
nt
atgacctcgacttctgtcgcttcgccgagcttcggcgatcttgctctgttgcctgccgtt
ctctctgctgttgaagcacaaggctacgaaattccctcgccgatccaagcgcagacgatt
cctgcgttgctggaaggccgcgatatgctgggccaagcacaaaccggcaccggcaaaacc
gctgcatttgcattgccattgttatcgcgtttagaacttacccgtcgcgagcctcaagta
ctggttatggctccgacccgtgaacttgctcagcaggttgcggcttcattcagtaagtat
ggccaaaacctcaagggtcttgaagtagctatcctttgtggtggccaagaataccgcgaa
cagttaggcgcgctaaagcgcggtgcccaggttattgttggcacccctggccgtattatc
gaccatcttgatcgcggtagtctgaagctcgacggtctttcggcactcgtgctggatgag
gctgacgaaatgctgcgcatgggctttatcgacgacgtaaaacgcgtggttgccgatact
cctaaagatgctcagcgtgtgttcttctcggcaacgctgccgactgaaattgaacgcatt
gttaaccgctatctggttaatccggtaaaagtcgcgattgagtcgcgcacgacgaccggt
gaaaacattgaacagcgtattgtacgcgtcgatggtggcgctaagcttgaagcagtggca
cgcatccttgaggttgagccggttgatgccgctattgttttcgtgcgtactcgtgctgct
tgtaccacgctggttgaacagctgacagcccgtggcgttaatgccgctggcttgtctggc
gatctagaccaaagcctgcgtgagcgcaccattacacgtctcaagcgtggcaaggttgat
gtgctgattgcgaccgacgtcgctgctcgtggtcttgacgttccgcgtattacgcacgtt
atcaactacgatctgccgcaagacgcagaagcctatacccaccgtatcggtcgtaccggt
cgtgcgggccgtagtggtatcgcgattacgttcgctggtttccgtgaaggccgtaaagtg
ggctggatggagcaggctaccggtcagaaaatgactgaaatgccgctgccagacgaagcc
gctattcgcgctcaccgtgatgacgtgttccatcatcgcgttgtagcagccctgaccaaa
ggtgctgaagagcagcgcgcactggttgagcgcctggtagaagaaggccatgatgccgtt
gagctagcttgtgcttttgccgcgatggcacgtgctgacgaagcgccgattggtcgcttg
caagcaccgcgtaaagagcgtactacgcgtgatagcgcgcctggtggcaagcccggtggc
cgtcgcgagcgctcaagcgcacctagcgaaggtatgattcgttaccgtgtttctgttggc
cataaagatggcgttaagcctggtcaactggttggtgcactggcgaacgaaggtggcatc
gaaggcgcccgtatcggtcgtattgatatccgcaacgctttctcggtagttgaactaccc
agtggcctgccttccactattctggcgaaaatggcgcgagcccgcgttgctggtcgcccg
ttagaaattagtgaagacagtgcacctgagcgtgctccacgtcgtcgtcgtgatgacggt
gatgcaccagttcgtcgccgcgaacgcgcttaa
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