Vreelandella alkaliphila: CUU95_03085
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Entry
CUU95_03085 CDS
T05720
Name
(GenBank) recombinase RecQ
KO
K03654
ATP-dependent DNA helicase RecQ [EC:
5.6.2.4
]
Organism
halk
Vreelandella alkaliphila
Pathway
halk03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
halk00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
CUU95_03085
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
halk03019
]
CUU95_03085
03400 DNA repair and recombination proteins [BR:
halk03400
]
CUU95_03085
Enzymes [BR:
halk01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
CUU95_03085
Messenger RNA biogenesis [BR:
halk03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
CUU95_03085
DNA repair and recombination proteins [BR:
halk03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
CUU95_03085
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Helicase_C
DEAD
RecQ_Zn_bind
ResIII
AAA_22
TniB
Motif
Other DBs
NCBI-ProteinID:
AYF32875
LinkDB
All DBs
Position
complement(658413..660422)
Genome browser
AA seq
669 aa
AA seq
DB search
MTSLSPQQTLKAVFGFDDFRGGQQAVVSRVLDGHSTAAIFATGAGKSLCYQLPALHLPHL
TLVVSPLLALMQDQLAFLARHGVAAASIDSTQDRATTRDVMERAKNGELKILMVSVERLK
NERFRHFLRQVQISLLVVDEAHCLSEWGHNFRPDYLKLPDYQRDFAIPQVLLLTATATPA
VIADMREKFSIVPENVITTGFYRANLELLVVPAMENRQQQLIDWLMPQMPPGNEAPTIIY
VTLQQTAEQVASALTVQGIAAQAYHAGLDSARRDEIQRQFMSGESPCIVATIAFGMGIDK
GNIRNVMHFDLPKSIENYSQEIGRAGRDGLPSTCLTIAGRDGLRVLENFVYGDTPEYAGI
LRLLEEISSAGQAPDRQWEVLLNTLSRDTNIRLLPLKTLLVRLEMHGIIAPRFAFLAEYR
LRYHIEPTALAGRFAGERAAFVRLLIDNIAIARTWGTVDFERLHQAGQAQQIDASRARVI
TALEYFQDKGWLTLEGKRMTDVYEICQPEFSVEAMASQLFNECLDRERIEIERLHSMLAL
FESQSCLTRRLAEHFGDTTFDGSLDTEQGRCGHCSVCYGNPVRLPDAAPLPALSEKDFIR
YATPLIERHTEQFGQPPNAQRLAHFLCGLTMPIFTPLKARGLNGFAVFEQRAYPEVRQWA
ERCLASSGS
NT seq
2010 nt
NT seq
+upstream
nt +downstream
nt
atgacctcgctatcaccgcagcagacgctgaaggcagtattcggatttgatgattttcgt
ggtggccagcaggcggtggtgtccagagtgttggatggacactctaccgcagcgattttt
gccaccggggcggggaagtcactctgttatcagttgcctgcgcttcatcttccgcatctg
acccttgtggtatcgccgctgctggcactgatgcaggatcagctcgctttcttagcgcgc
catggtgttgcggccgccagtattgattctacccaagatcgcgctacgacccgtgatgtg
atggagcgcgccaaaaacggtgagctaaaaatcctcatggtgtcggtggagcggcttaag
aacgagcgttttcggcactttctacgccaggttcaaatatcgctgctagtggttgatgaa
gcacactgtctctctgagtggggacataacttccgtcccgattaccttaaactgcccgat
tatcagcgtgattttgctattccccaagtgttactactgacagccacggccacgccagcg
gttatcgctgatatgcgtgagaagttctcaatcgtaccggaaaatgtcattaccacgggc
ttttatcgcgctaacttagagcttctggtggtacccgccatggaaaatcgtcagcaacag
ctgattgattggcttatgccacaaatgccgcctggcaacgaagcgcccacgattatttac
gtcaccttgcagcaaactgccgagcaggtggcaagtgcgctgaccgttcaggggattgct
gcccaggcgtaccatgcggggctggattcagcccgccgcgatgagattcagcgccagttt
atgagcggcgaatcgccctgtattgtcgctaccattgcctttggcatgggcattgataaa
ggcaatatccgcaacgttatgcactttgatctacctaaatcgattgagaattacagccag
gaaattggtcgggcagggcgcgatggactgccttccacctgtttaaccattgccggacgc
gatggtctacgggtgctggagaacttcgtttacggcgacacgcctgagtacgcgggtatt
ttgcgcttactggaagaaatttcatcagccggtcaagcgccagatcgtcagtgggaagta
ctgctcaatacgctttcccgagataccaatatccgcctgctaccacttaaaacgctactg
gtgcggctggaaatgcacggcattattgcgccgcgctttgcgttcttagccgagtatcgg
ttgcgctaccacattgagcctactgccttagcggggcgttttgcaggagagcgggcggcc
tttgtacgtttgttaatcgacaatattgctatcgctcgtacttgggggacggtggatttt
gagcgactgcatcaggctgggcaggcacagcaaattgatgcttcccgtgcccgcgtcatt
accgcgcttgaatacttccaggataaaggttggttgaccctggaaggtaagcgcatgacc
gatgtgtatgaaatttgtcagccggaattttcggttgaggcgatggcaagccagttattt
aatgagtgtctagatcgggagcgaatcgaaattgaacggttgcactccatgctggcactg
tttgagtcgcaaagctgcctgactcggcggttagctgagcattttggggataccaccttc
gatgggtcacttgataccgagcagggccgctgtggccactgttcggtatgctacggcaac
ccggttcggctgccggatgcggcgccattacccgcgctgtctgaaaaggattttatccgc
tatgccacaccgctgattgagcgccataccgaacagtttggccagccgcccaacgcccag
cggttggcgcacttcttatgtggtttaaccatgccgattttcaccccactcaaagcccgc
ggccttaacggcttcgcggtctttgaacagcgtgcctaccctgaagtgcggcagtgggca
gagcgctgtttagctagctccggcagttaa
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