Vreelandella alkaliphila: CUU95_03465
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Entry
CUU95_03465 CDS
T05720
Name
(GenBank) DNA-formamidopyrimidine glycosylase
KO
K10563
formamidopyrimidine-DNA glycosylase [EC:
3.2.2.23
4.2.99.18
]
Organism
halk
Vreelandella alkaliphila
Pathway
halk03410
Base excision repair
Brite
KEGG Orthology (KO) [BR:
halk00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
CUU95_03465
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
halk03400
]
CUU95_03465
Enzymes [BR:
halk01000
]
3. Hydrolases
3.2 Glycosylases
3.2.2 Hydrolysing N-glycosyl compounds
3.2.2.23 DNA-formamidopyrimidine glycosylase
CUU95_03465
4. Lyases
4.2 Carbon-oxygen lyases
4.2.99 Other carbon-oxygen lyases
4.2.99.18 DNA-(apurinic or apyrimidinic site) lyase
CUU95_03465
DNA repair and recombination proteins [BR:
halk03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA glycosylases
CUU95_03465
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Fapy_DNA_glyco
H2TH
zf-FPG_IleRS
Motif
Other DBs
NCBI-ProteinID:
AYF32948
LinkDB
All DBs
Position
complement(744083..744910)
Genome browser
AA seq
275 aa
AA seq
DB search
MPELPEVETTRRGIAPYLEGQEITEVLVRQTRLRVPVPEDLAERLVGARVGVLKRRAKYL
QIPVATLAGEATLLWHLGMSGSLRIANVGDLPKKHDHVDVVTAKGHVLRYHDPRRFGFVD
WQQGDGSLDTRLAHLGPEPLDDAFNGRWLYNASRNKRVAVKPFLMDNRVVVGAGNIYAAE
ALFMAGIDPRRAAGKISLARYQQLAAAVKEVLAAAITQGGTTLRDFVSGQGEPGYFAQQL
NVYGRHGQPCLRCGVELRRITLGQRASVFCPGCQR
NT seq
828 nt
NT seq
+upstream
nt +downstream
nt
atgcccgaattgcctgaagttgaaacgacgcgacgcggcattgccccctatttagaaggg
caagagattaccgaggtgctggtgcgccagacccggttacgcgtgccggtgcccgaagat
ctagccgagcggctagtaggagctcgggttggcgtattaaagcgtcgcgctaagtaccta
caaattcccgtggcgacacttgcaggtgaggccacgctgttgtggcatctgggcatgtcg
ggcagcctaaggattgcaaacgtcggcgatttgcctaaaaagcatgatcatgttgacgtg
gtgacggccaaggggcatgtgctgcgctaccatgacccgcgccgttttggttttgttgac
tggcagcagggcgatggcagtttggatacgcgccttgcgcaccttggtcctgagccgttg
gatgacgcgtttaacggtcgctggctctataacgcatcgcgtaataaacgcgttgcggtg
aagccttttttaatggataaccgcgtggtggtcggtgcgggtaatatttacgctgccgaa
gcgctatttatggcgggtattgatccccggcgtgccgctgggaaaatttccctggcccgt
taccagcagctagccgcggcggttaaagaggtgctggcagcagcgattacccaaggtggc
accacgctgcgggattttgtcagtgggcagggcgagccaggttactttgcccagcagctg
aatgtatatgggcgccatgggcagccttgcttgcgctgtggcgttgagctgcgtcgtatc
actctaggccagcgggccagcgtgttttgccctggttgccagcgttag
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