Vreelandella alkaliphila: CUU95_13200
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Entry
CUU95_13200 CDS
T05720
Name
(GenBank) RNA chaperone Hfq
KO
K03666
host factor-I protein
Organism
halk
Vreelandella alkaliphila
Pathway
halk02024
Quorum sensing
halk03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
halk00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
CUU95_13200
09140 Cellular Processes
09145 Cellular community - prokaryotes
02024 Quorum sensing
CUU95_13200
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
halk03019
]
CUU95_13200
03036 Chromosome and associated proteins [BR:
halk03036
]
CUU95_13200
Messenger RNA biogenesis [BR:
halk03019
]
Prokaryotic type
Bacterial mRNA degradation factors
Other RNA degradation factors
Chaperones
CUU95_13200
Chromosome and associated proteins [BR:
halk03036
]
Prokaryotic type
Nucleoid associated proteins
Other nucleoid associated proteins
CUU95_13200
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Hfq
LSM
Hfq_1
Motif
Other DBs
NCBI-ProteinID:
AYF34707
LinkDB
All DBs
Position
2924843..2925091
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AA seq
82 aa
AA seq
DB search
MSKGQSLQDPYLNILRKERIPVSIFLVNGIKLQGQIESFDQFVILLRNTVSQMVYKHAIS
TVVPSRNVRLPAQDPAAPDADI
NT seq
249 nt
NT seq
+upstream
nt +downstream
nt
atgtccaaagggcagtcccttcaagacccgtacctgaacattttgcgcaaggagcgcatt
ccggtctctattttcctggtgaacggcattaaattgcagggccagattgaatcatttgac
cagtttgtcattttattgcgcaataccgtcagtcagatggtttataaacacgctatttcc
acggtagtgccttcgcgcaacgtgcgtttgccggcacaagatccagccgcgcccgacgcg
gacatctaa
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