KEGG   Vreelandella alkaliphila: CUU95_13200
Entry
CUU95_13200       CDS       T05720                                 
Name
(GenBank) RNA chaperone Hfq
  KO
K03666  host factor-I protein
Organism
halk  Vreelandella alkaliphila
Pathway
halk02024  Quorum sensing
halk03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:halk00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    CUU95_13200
 09140 Cellular Processes
  09145 Cellular community - prokaryotes
   02024 Quorum sensing
    CUU95_13200
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:halk03019]
    CUU95_13200
   03036 Chromosome and associated proteins [BR:halk03036]
    CUU95_13200
Messenger RNA biogenesis [BR:halk03019]
 Prokaryotic type
  Bacterial mRNA degradation factors
   Other RNA degradation factors
    Chaperones
     CUU95_13200
Chromosome and associated proteins [BR:halk03036]
 Prokaryotic type
  Nucleoid associated proteins
   Other nucleoid associated proteins
    CUU95_13200
SSDB
Motif
Pfam: Hfq LSM Hfq_1
Other DBs
NCBI-ProteinID: AYF34707
LinkDB
Position
2924843..2925091
AA seq 82 aa
MSKGQSLQDPYLNILRKERIPVSIFLVNGIKLQGQIESFDQFVILLRNTVSQMVYKHAIS
TVVPSRNVRLPAQDPAAPDADI
NT seq 249 nt   +upstreamnt  +downstreamnt
atgtccaaagggcagtcccttcaagacccgtacctgaacattttgcgcaaggagcgcatt
ccggtctctattttcctggtgaacggcattaaattgcagggccagattgaatcatttgac
cagtttgtcattttattgcgcaataccgtcagtcagatggtttataaacacgctatttcc
acggtagtgccttcgcgcaacgtgcgtttgccggcacaagatccagccgcgcccgacgcg
gacatctaa

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