Vreelandella alkaliphila: CUU95_16035
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Entry
CUU95_16035 CDS
T05720
Name
(GenBank) ATP-dependent RNA helicase RhlE
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
halk
Vreelandella alkaliphila
Pathway
halk03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
halk00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
CUU95_16035
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
halk03019
]
CUU95_16035
Enzymes [BR:
halk01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
CUU95_16035
Messenger RNA biogenesis [BR:
halk03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
CUU95_16035
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
AAA_19
ResIII
P-loop_SecA
AAA_22
Gag_p24
Sacchrp_dh_NADP
FANCF
Shikimate_DH
Motif
Other DBs
NCBI-ProteinID:
AYF35235
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All DBs
Position
3522600..3523856
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AA seq
418 aa
AA seq
DB search
MSFSELGLHDDLLRAVTAQGYTQPTPIQQKAIPVVLEGRDMLASAQTGTGKTAGFTLPML
QRLANGKRPGKRQVRALVLTPTRELAAQVGESVTAYGKHLSLRSHIIFGGVGQQPQVDAL
KAGLDVLVATPGRLLDLHQQGHVDLSAVEILVLDEADRMLDMGFIHDIKRLLRLVPKQRQ
NLLFSATFSNEIQLLAQQLLNNPALIEVAPRNTTAEKIEQTIYRVDRDKKRELLAHLIQQ
HGWFQVLVFTRTKHGANRLAEQLSKQDIPAMAIHGNKSQGARTRALGAFKSGDLQVLVAT
DIAARGLDINELPHVVNFDLPNVAEDYVHRIGRTGRAGSDGEAVSLVCVDEHGLLSGIER
LIKQNLPKRIEPGFEPDPNAKPEPIENGRRGQKQPRAKRKPEGQAANTGGERRRRARR
NT seq
1257 nt
NT seq
+upstream
nt +downstream
nt
atgagcttttctgaacttggtctgcacgacgatttactacgcgcggtaaccgcgcagggc
tatacgcagcctacccctattcaacaaaaagcgatccccgttgtacttgaaggtcgcgac
atgctcgccagtgcacaaactggcacaggcaaaaccgctggttttacgttgcccatgtta
cagcggttagcgaatggcaagcgacccggcaaacgccaagtacgcgcgttagtgctcacg
cctacgcgcgagcttgctgcccaggtaggcgaaagcgtaaccgcttacggcaagcacctc
tctttacgctcgcatattattttcggcggtgttggccaacagccacaagtggatgcactc
aaagcggggcttgatgtgttggtcgccacgcctggtcggctactagatttgcatcagcag
ggccatgtcgatctatcggccgtcgaaatcctggtgctcgatgaagctgaccgcatgctc
gacatgggattcatccatgatatcaagcgtctattacgtttagtgccgaaacagcgtcaa
aacctgctgttctctgcaacattctccaacgaaattcagctattggcgcaacagctgctc
aacaaccccgcgttaatagaagtcgcacctcgcaacacgaccgctgaaaagattgaacaa
accatttaccgagtagatcgtgataaaaaacgcgagttgctggcccatttaattcagcag
catggctggtttcaggtactcgttttcacgcgcaccaaacatggcgcaaaccgcttagca
gagcagctttctaagcaagatatacccgccatggccatccatggcaataagagccaaggg
gctagaacacgtgcactaggtgctttcaaaagcggtgatttgcaggtacttgtcgccact
gacattgccgctcgcgggctagatatcaacgaactgccccatgtcgttaatttcgactta
cccaatgtggcagaggactatgttcaccgtattggacgtaccggccgagcgggcagcgat
ggagaagcagtttcgctcgtatgtgtcgacgaacacggtttgctgagtgggattgagcgt
cttatcaagcaaaacctgcctaaacgtatcgaacccggttttgaacctgatcccaacgct
aagcccgagccgattgaaaatggccgccgtggtcagaagcagccccgcgccaagcgtaaa
ccggaaggacaagcagccaatactggcggtgaacgtcgtcgtcgcgcccgtcgctag
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