Vreelandella alkaliphila: CUU95_16155
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Entry
CUU95_16155 CDS
T05720
Name
(GenBank) MBL fold metallo-hydrolase
KO
K12574
ribonuclease J [EC:3.1.-.-]
Organism
halk
Vreelandella alkaliphila
Pathway
halk03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
halk00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
CUU95_16155
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
halk03019
]
CUU95_16155
Messenger RNA biogenesis [BR:
halk03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
CUU95_16155
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_J_b_CASP
Lactamase_B
Lactamase_B_2
RMMBL
Anti-Pycsar_Apyc1
Motif
Other DBs
NCBI-ProteinID:
AYF35259
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Position
3550235..3551833
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AA seq
532 aa
AA seq
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MNLTLYGYDDEWIAVDCGMMIRQDLPNSPLQVPNTDTLAALNITPKALYITHGHEDHIGA
VAWLWPKWNCPIFATPLAAGLLRHKFAEHQLSSAAINVVEPGDAMELGPFTLRYLQVTHS
IPESCSILMQAGDYRVLHTGDWKLDPNPLIGSPINAAQFRALAPIDLVVGDSTNAPMPGH
SGSEGDVAKALAHTLKQCKGRVVVSCFASNLARVLAIGIAAQQCGRRVSLMGRSMERMVS
VAKGLGYLDDFPPLVPPHDLGYLPPEEVVIIATGSQGEPRAALQRLAQRRHPFVDLEPGD
SIIFSAKAIPGNERPIEQLKKRLAQLGVSIFDEMNHPELHATGHPAEDELRKLYQWVRPK
TLLPVHGEARHQAAHQEIATSLGINAPLAPVNGDMLMFDNLGLRCEARYPQPPCIVNQNS
VVPHPGLDTGSHSSRRGSLFLALPVTATDTGWCRIGRLMLDASGTSPLDEDSFSEWLDDQ
LLEIAAETLADLRQALQPRLIHWLANHLQHMPDVHLQIMATEMPSSEAISDS
NT seq
1599 nt
NT seq
+upstream
nt +downstream
nt
atgaatcttacgctgtatggatacgatgatgagtggatcgccgtcgactgcggcatgatg
attcgccaagatctacctaattctccactgcaggtgcccaatacagatacattagcagca
ctcaacattaccccaaaggcactctacattacccatggccatgaagatcatattggcgcc
gtggcgtggctctggcctaagtggaattgccctatttttgcaacgccgttagcggcggga
ttgctgcgccataagtttgcagaacatcagcttagtagcgccgctataaacgttgtggaa
ccgggtgatgcaatggagctcggccccttcacgctgcgttaccttcaagttacccattcg
attcctgaaagctgctcaatcctaatgcaggcaggcgactatcgcgtgctacacaccggg
gactggaaactagaccctaacccgttaattggttcgcccattaacgctgctcaatttcgt
gcgctcgcgcctatcgacctcgtcgtaggcgactccactaacgccccgatgcccggccat
tcaggcagtgaaggcgatgttgcaaaagcactcgctcacaccttgaagcagtgcaaaggc
cgcgtggtggtatcttgttttgccagcaacctcgcccgcgtattagcgattgggattgct
gcccaacagtgcggccgacgcgtcagtctgatgggccgttcaatggaacgcatggtgagt
gtcgcgaagggcctagggtatctagacgactttccgccgctagtaccgccccatgactta
ggttacctgccgccagaagaggtggtgattattgctacgggcagccagggcgaaccacgt
gcagcactgcaacgcttagcacagcggaggcacccgtttgtggatcttgagccaggcgat
agcatcattttttctgccaaagccataccaggcaacgagcgccctattgaacaactgaaa
aaacgcctagcgcagcttggggtgtcaattttcgatgagatgaaccacccagaattacac
gcgactgggcatcctgccgaagatgagctaagaaaactgtatcaatgggttcggccaaaa
acattgctgccggtgcatggagaggcgcgccatcaggctgcccatcaagagattgccacc
agcctcggtattaacgccccgctcgcaccggtaaatggcgacatgttgatgttcgacaat
ctaggcttacgctgcgaagcacgctatccccagccgccctgcatcgttaatcagaacagc
gtcgtgcctcatccagggctcgataccggctctcactcatcgcggcgcggcagcttgttc
ttagcgcttcccgttacggctaccgacactggctggtgccgcattggccgtttgatgctg
gatgccagcggtaccagcccactcgatgaagatagtttcagcgaatggctagatgatcag
ttattagaaatagcagcagagacattggccgatttgcgtcaagcgctgcaaccgaggctc
attcattggctagccaatcaccttcagcacatgccagacgtacatttacagataatggcc
actgaaatgccctcttcagaagccattagcgatagttaa
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