Vreelandella alkaliphila: CUU95_16550
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Entry
CUU95_16550 CDS
T05720
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
halk
Vreelandella alkaliphila
Pathway
halk03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
halk00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
CUU95_16550
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
halk03400
]
CUU95_16550
Enzymes [BR:
halk01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
CUU95_16550
DNA repair and recombination proteins [BR:
halk03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
CUU95_16550
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TRCF
DEAD
UvrB_inter
Helicase_C
CarD_TRCF_RID
MFD_D3
ResIII
UB2H
ERCC3_RAD25_C
Glyco_tran_WecG
AAA_30
AAA_22
Motif
Other DBs
NCBI-ProteinID:
AYF35331
LinkDB
All DBs
Position
3625804..3629298
Genome browser
AA seq
1164 aa
AA seq
DB search
MYDPDSVSAQNDTVTMSSFSLLEPPQPKGIRDTLYLTAPPGSATALALAQVALSAPLLVI
TPNTASAQRLEQDLAFYSNVPVLPFPDWETLPYDSFSPHQDIISSRLRTLRLLQDGVRGI
VLVPINTLMQRLPPVSYIAGRVMTLKAGAKLNRETFRESLSRAGYRAVETVYEPGEYAMR
GAIIDLFAMGMDEPIRIDLFDDEIDTLRHFDPGNQRSTNKVDVIELLPAHEYSLSRSAIA
CFREQFETLFDVDPRQCPLYNDALKAIPSPGLEQYLPLFFDETASLFEHVTDDTRVALLP
GVFEAAEQHWQSIESRYENLGVDPTRPLLPPLRAFIPVNDVFSAIKARPRIELTEDNTQR
HALAPKAQALPSLAINARAKHPLNELATFLDAQQATRVLFVAESRGRREALEEVLAPLKL
NLPHIDSFQDFLSSTNRIAITESLVGSGLWLTEPNVAVISETELFGDVVRQSRRREKATD
DNELAVRHLSELREGAPVVHQAHGVGRYLGLETLEAGGQANEFLALSYADGAKLYVPVDS
LHLISRYSGADDELAPLHRLGSDQWEKARRKAAEKIRDTAAELLDIYARREAQEGFIYDT
PGDEYIRFSASFPFEETPDQQAAIEAVISDMISPQPMDRVVCGDVGFGKTEVAMRAAFLA
VQTGRQVVVLVPTTLLARQHFENFRDRFADTAVNISLISRFTGGKEMTQTLESIKNGQTD
IVIGTHKLLSKSVELPKMGLLIIDEEHRFGVAQKEKLKTLRAEIDILTLTATPIPRTLNM
AMSGIRDLSIIATPPARRLSVKTFVQQRDSSVIKEALLREILRGGQVYFLHNEVKTIENA
AEQIRELVPEARVAVAHGQLPERSLERVMSDFYHRRFNVLVCSTIIETGIDVPSANTILI
ERADKFGLAQLHQLRGRVGRSHHQAYAYLLTPPPKAMTRDAVKRLEAISASDDLGAGFTL
ASHDMEIRGAGELLGDEQSGQMETIGYTLYMEMLDRAVKAIRAGKTPNIDAPFNTGVEIS
LNLPALIPDDYIHDVQQRLVMYKRIANTQSDAELKELQVELIDRFGLLPQPLKNLIRQTR
LRHRAEQLGVARIEAGENRGRVLFNGSTQVDPLTLVTLIQKSPQHYRLDGSDTLRFEFPM
ETTEQRFDKVEALLTTLNQKVAAA
NT seq
3495 nt
NT seq
+upstream
nt +downstream
nt
gtgtatgatccagattccgtttcagcgcaaaacgataccgtgactatgtcctctttttct
ctgctcgaaccgccccaacccaaagggattcgcgacacgctctacctaacagcgccgccg
ggcagtgcaactgccctggcgctggctcaggtcgcgttaagcgcaccattattggttatt
acgccgaacactgccagcgcacagcgcctggagcaggatctggcattctatagcaatgtt
cccgttctaccctttccagactgggaaacactgccttatgacagcttctccccgcaccag
gatattatctcgtcacgcctgcgtacgctgcgcttactgcaggatggcgtacgcggcatt
gtgctggtgccaatcaatacgctgatgcagcgtctgcctcccgtatcatacatcgctggg
cgcgtgatgacgctaaaagcgggcgctaagctaaatcgggaaacatttcgcgaatcgcta
tcgcgggcaggttatcgtgccgtagaaacggtctacgagcctggcgaatacgccatgcgc
ggcgcaattatcgaccttttcgccatgggtatggatgagccaattcgtatcgatttattt
gatgacgaaatcgatacgctacgccattttgaccctggtaatcagcgctctaccaataaa
gtcgatgtgattgagctactcccagctcatgagtattcactcagccgcagcgctattgct
tgcttccgagaacagtttgaaacgctttttgatgttgatccgcgccagtgccctctctat
aacgatgcactgaaagccatcccctccccgggcctggaacaatatttgccactgttcttc
gacgaaaccgcttctttatttgagcacgttaccgatgacacccgtgtagcactgttgcct
ggcgtattcgaagcagctgagcaacactggcagtccattgaatcacgctacgagaatttg
ggtgttgacccaacacgcccccttttaccaccgcttcgcgcgttcattcccgttaatgac
gttttttcggcgatcaaagctcgcccccgaatcgaactaaccgaagacaacacgcaacgc
catgccctggcgccgaaagcccaagcactaccctcgctggcaattaacgctcgcgccaaa
caccctcttaacgaactggctacctttctggatgcacagcaagctacacgggtactgttt
gttgccgagtcacggggacgcagagaagcgttagaagaagtattggcgccgcttaaatta
aacctgccccatattgacagcttccaagactttttaagcagcactaaccgcattgccatt
actgaaagtttggtaggcagcggcttgtggcttaccgaaccgaatgtcgcggtgatcagc
gagactgagctctttggcgatgtagtgcgccagagtcggcggcgagaaaaagcgaccgac
gacaacgaattggccgtgcgccatttatctgagttacgagaaggcgcaccggttgttcac
caagcacatggcgtcggccgctacttggggctggaaacccttgaagctggcgggcaggct
aacgaattcctggcgctttcatatgccgacggtgccaagctctatgtcccagtcgatagc
ttgcatcttatttctcgctacagcggcgctgatgacgaactcgctccgctgcacaggtta
ggctcagatcagtgggagaaggcacgtcgtaaagcggctgagaaaatccgagatactgcc
gctgagctactcgacatctacgcccgacgagaggctcaggaagggttcatttatgatacg
ccgggcgatgaatacattcgcttctctgccagcttcccgtttgaagaaacccctgaccag
caggcagccattgaagcagtaataagcgacatgatctctcctcagccaatggatcgcgtc
gtttgtggcgatgtagggtttggcaagaccgaagtcgccatgcgtgctgcattcctagcc
gttcagactggtcgccaagtagtcgtgcttgtgcccactacgctattagctcgccagcac
tttgaaaacttccgcgaccgctttgccgacaccgctgtgaatattagccttatttcacgc
ttcacaggcggcaaggaaatgacgcaaaccttggaaagcatcaaaaatggccagaccgat
attgtaatcggtactcataaactgctatctaaaagcgttgagctgcccaaaatggggctt
ttaattatcgacgaagagcaccgctttggggtcgcgcagaaagagaaactcaaaacgctg
cgcgccgaaatcgacattctgacgctaacggcaacaccgattccgcgcaccttgaacatg
gccatgagcggcatccgagacctgtcgattattgccaccccgccagcacggcgcttatcg
gtcaaaacgtttgtgcaacagcgagatagcagcgtcattaaagaagccctgctgcgtgaa
atattacgcggcggacaagtctactttttgcacaatgaagtcaaaacgattgaaaacgct
gccgaacaaatccgcgaactggtgccagaggcacgggttgctgtcgctcacggccaatta
cccgagcgcagccttgagcgagtcatgtcagacttctaccatcgtcgcttcaatgtgctg
gtgtgctctaccattatcgaaaccggcattgacgtgcccagcgccaacacgattctaatt
gagcgcgccgataagttcggcttggcccagctacaccagctgcgtggccgtgttggacgc
agccaccaccaagcatacgcttacctactaacgccgccccccaaggcaatgacacgagat
gccgtgaaacgtctggaagcgattagcgcctctgatgatctcggtgctggcttcacctta
gcaagccacgacatggagatacgtggcgcaggcgagcttctaggcgacgagcagagcggc
caaatggaaacaatcggctacacgctttacatggaaatgctggatcgcgcggtgaaggct
atccgtgcgggcaaaacgcctaacattgacgcccccttcaacaccggtgtcgagattagc
ctcaatctgccggcgctgattcctgacgactatattcacgacgtacagcagcgcctggtg
atgtataaacgtatcgccaatacccagagcgacgctgagcttaaggagctacaagtcgag
cttattgatcgctttgggctccttcctcagcccttgaagaacctgatacgtcagactagg
cttcgccaccgcgctgaacaactgggtgtagcgcgcattgaagccggtgagaaccgtgga
cgagtgcttttcaacggctctacccaggtcgatccgctaacccttgtgacgcttattcaa
aaatcgccacagcactaccgactggatggctcagacactttacgatttgaattcccaatg
gaaaccaccgaacagcgttttgataaagtcgaagctctgcttacaacactcaatcaaaaa
gtagcggcggcgtga
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