Vreelandella alkaliphila: CUU95_17925
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Entry
CUU95_17925 CDS
T05720
Symbol
rnd
Name
(GenBank) ribonuclease D
KO
K03684
ribonuclease D [EC:
3.1.13.5
]
Organism
halk
Vreelandella alkaliphila
Brite
KEGG Orthology (KO) [BR:
halk00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
halk03016
]
CUU95_17925 (rnd)
Enzymes [BR:
halk01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.5 ribonuclease D
CUU95_17925 (rnd)
Transfer RNA biogenesis [BR:
halk03016
]
Prokaryotic type
3'processing and CCA adding factors
3'processing factors
CUU95_17925 (rnd)
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol_A_exo1
HRDC
RNAseD_HRDC_C
DNA_pol_A_exoN
Motif
Other DBs
NCBI-ProteinID:
AYF35853
LinkDB
All DBs
Position
complement(3928898..3930028)
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AA seq
376 aa
AA seq
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MSSLAPSLYQWIDSADALDAACEQVAGASVIALDTEFFRENTFFPVPALIQFTTGDMAYL
VDPLSTPCTAAFRDLLQNSAIKLLHACSEDLEVFQHWAGVLPVPLIDTQVAQAFLGETPG
MGYQKLVEHWMGETLPKEETRSNWLERPLTPSQCEYAALDVIYLLKVWRLQAEKLGQLGR
REWLDDECASLIEQAGRSVESDGQWYTRQRQLWRLDPRQLEAYRLMTIWREGETRRRDLP
RNWLVSDKLLFAVAEKMPKNRYELAEIEGVKPPLVKKEGDTLLSLVKQAQHCPEGDLPAR
WPDPMHPVFKRRFKALKKVVTEKAAELQIAPEMLLRRRDIEALVMQRLANQPLTTPGGWR
DAYLTQEIHQALEELS
NT seq
1131 nt
NT seq
+upstream
nt +downstream
nt
ttgtcctctttagccccctcgttgtatcaatggattgatagtgccgacgccttagatgct
gcatgcgagcaggtcgccggtgccagtgtgattgccttagatactgaatttttccgtgaa
aacacgttttttccggtgccagcgcttattcagttcaccaccggtgacatggcgtattta
gtggacccgttgagcacgccttgcaccgctgcttttcgtgatttgttgcaaaatagtgcc
atcaaattactgcatgcctgcagcgaagacctcgaggttttccagcactgggccggcgta
ttgccagtaccgcttatagatacgcaagtcgctcaggcttttttgggggaaactcccggc
atgggctatcaaaaattggtagagcactggatgggggaaacgctgcctaaagaagagacg
cgttctaactggttagagcgccccttaacgccctcccagtgcgaatatgcggcgttagat
gttatctatttgctgaaggtctggaggcttcaagcggagaagcttgggcaactggggcgg
cgtgaatggcttgacgatgagtgtgccagtcttatcgagcaggcaggccgcagcgtagag
agcgatggccaatggtatacgcgccagcggcagttgtggcgccttgatcctcgccagctt
gaagcctaccgcttaatgaccatctggcgggaaggcgaaacccgccgtcgggatttgccg
cgtaattggttggttagcgataagttgttgttcgcggtggctgaaaaaatgcctaaaaat
cgttatgagctagcagaaattgaaggggttaagccgcccctggttaaaaaagaaggcgat
acgctgctgtcgctggtgaaacaggctcagcattgccccgaaggtgatttaccggcgcgc
tggccagacccgatgcatcctgtgtttaagcggcgctttaaagcacttaaaaaagtagtg
acggagaaggctgctgagctacaaatagcgcccgagatgttgctgcggcggcgagatatt
gaggcgcttgtgatgcagcggcttgctaaccagccattaaccactcctggcggctggcgt
gatgcctatttaactcaagaaattcatcaggcgcttgaggagttgtcgtaa
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