Halomicrobium sp. LC1Hm: LC1Hm_0307
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Entry
LC1Hm_0307 CDS
T06261
Symbol
holB
Name
(GenBank) ATPase involved in DNA replication HolB, small subunit
KO
K04801
replication factor C small subunit
Organism
hall
Halomicrobium sp. LC1Hm
Pathway
hall03030
DNA replication
Brite
KEGG Orthology (KO) [BR:
hall00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
LC1Hm_0307 (holB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
hall03032
]
LC1Hm_0307 (holB)
DNA replication proteins [BR:
hall03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (archaeal)
RFC (replication factor C)
LC1Hm_0307 (holB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Rep_fac_C
AAA
Intein_splicing
DNA_pol3_delta2
Rad17
RuvB_N
AAA_assoc_2
AAA_16
RCF1-5-like_lid
AAA_14
ResIII
AAA_7
DUF7487
DNAX_ATPase_lid
AAA_18
TIP49
nSTAND3
PhoH
AAA_22
AAA_30
AAA_28
DUF3400
AAA_24
AAA_25
NB-ARC
Mg_chelatase
NUMOD3
RNA_helicase
Viral_helicase1
Motif
Other DBs
NCBI-ProteinID:
QGA81373
UniProt:
A0A5Q0UI50
LinkDB
All DBs
Position
complement(278984..281257)
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AA seq
757 aa
AA seq
DB search
MSEVERSGREEVWIEKYRPQTLADVVGHETIVERLQSYVDRNDLSHMLFAGPAGTGKTTS
ATAIARELYGEDWQEHFLELNASDERGIDVVRDRIKSFARTSFGGVDYRIIFLDEADALC
VPPGTEVVTGYPSKPEVKEIEDVAADGEPIPSVDFETNEIQSDKGRLVDSGVADFFEIEL
SDGRTILASLSHPFFVVGEDGRLVEKELQELEPGDEIADFKEPVGVSQCEICGDWTTGRF
CSLACKNDGHSREMQGDGNPMHGTEWSDERREKIVEKLSDGRLSGENNPNYGGDFHGVSV
WEMDQERIDQFRETVSELRSGTSWEEWVVDADADTVKEEIGRSSAEWWANVDDERKAEII
EKATENCDYPVCDITGDNNPMRDPEVAQKVSEALQGHEPTGGNIRHSEELGHLVRSDWEY
EVAKTLQDADIEYEYEPEFELSDSVFHPDFLVDDTVIEVKGVAALWGQTEKVEEFLETYG
DEYRFVVVGDSALPHHEHYDRDEFDAAVVSDGGRQAVDTATVNSIEYSHRGKAYNISMEG
TPNFMLANGILTHNTSDAQSALRRTMEQFSNNVRFIMSCNYSSQIIDPIQSRCAVFRFSP
LGDEAVEEEIRHIADEEGIELTDDGVDALVYAAGGDMRKAINGLQAASVSGEVVDEEAVF
AITSTARPEVIQGMVQDAIDGDFTAARAQLDDLITEEGIAGGDIIDQLHRSIWEFDVPDE
QAVRILDRVGETDYRITEGANERIQLEAMLASLSLDE
NT seq
2274 nt
NT seq
+upstream
nt +downstream
nt
atgagcgaggtcgagcgttcgggtcgggaggaagtctggatcgagaagtaccgcccgcag
accctggcagacgtcgtgggccacgagacgatcgtcgagcgcctgcagagctacgtcgat
cgcaacgatctgagccacatgctgttcgcggggccggccggcaccggcaagaccacgagc
gcgacggctatcgcccgggaactgtacggcgaggactggcaggagcacttcctcgaactg
aacgcctccgacgaacgcgggatcgacgtggtccgagaccggatcaagagcttcgcccgc
acttctttcggcggtgtcgactaccgaataatatttctcgacgaggcagacgcgctctgt
gtaccgccaggaactgaggtcgtgacagggtacccgtccaagccggaagtgaaagagatc
gaagacgtagcggcggacggggaaccgattccatccgtcgacttcgagaccaacgaaata
cagtccgacaagggtcggctcgtcgactccggcgtcgccgacttcttcgaaatcgagctc
tcggacgggcggacgatcctcgcgagcctctcgcatccgttcttcgttgtgggagaagac
ggcagactcgtcgaaaaggagctacaagaactggaacccggagacgagatcgccgatttc
aaagaaccagtcggcgtctctcagtgtgagatctgtggggactggacgacgggtcggttc
tgttcactcgcctgcaaaaacgacggtcacagccgcgagatgcagggtgacggcaatccg
atgcacggcaccgagtggtcggacgaacgacgtgagaagatcgtcgagaaactctccgac
gggcgattatcgggcgaaaacaatcccaactacggcggcgacttccacggcgtgtcggtc
tgggagatggatcaggaacgcatcgaccagttccgtgagacggtcagcgaacttcgatcc
ggcacttcgtgggaggagtgggtcgtcgacgccgacgctgacacggtaaaagaggagatc
ggtcgctccagtgcggaatggtgggcgaacgtggacgacgagagaaaagccgaaataatc
gaaaaagcgacggagaactgtgactatcccgtctgtgatatcaccggggacaacaaccca
atgcgcgatcctgaagtcgcacagaaggtgtcagaggccctgcaaggacacgaaccgacg
ggcggaaacatccgacacagcgaagagctcggtcacctcgttcgatctgactgggagtac
gaggtcgcaaagacgctccaagatgccgatatcgagtacgagtacgaaccggagttcgaa
ctatccgactcggtctttcaccccgacttcctcgtcgacgatacggtcatcgaagtcaaa
ggtgtcgccgcactgtggggacagacggagaaggtcgaggagttcctcgaaacctacggt
gacgagtatcggttcgtcgtcgtcggtgacagcgccctcccacatcacgaacactacgat
agagacgagttcgacgccgccgtcgtctcagatggtggtcgacaggccgtcgataccgcg
acggtgaacagtatcgagtacagtcatcgggggaaagcatacaacatcagtatggagggg
accccgaacttcatgctcgcgaacgggattctgacccacaacaccagcgacgcccagtca
gcactccggcggacgatggaacagttctcgaacaacgtccgcttcatcatgtcgtgtaac
tactccagccagattatcgatccgatccagtcccggtgtgccgtcttccgcttctcgccg
ctgggcgacgaggccgtcgaggaagagatccgtcacatcgccgacgaggaagggatcgaa
ctcaccgatgacggcgtcgacgcgctggtctacgccgccgggggcgacatgcgcaaggcg
atcaacggcctgcaagcggcctcggtctcgggggaggttgtcgacgaggaagcggtcttc
gcgatcacttcgacggcccgtccggaggtcatccaggggatggttcaggacgccatcgac
ggcgacttcacggccgctcgggcgcagctggacgacctcatcacggaggaggggatcgcc
ggtggcgacatcatcgaccagctccaccggtcgatctgggagttcgacgtgcccgacgag
caggccgtccgtatcctcgatcgggtcggcgagacggactaccggatcaccgagggggcc
aacgagcggatccagctcgaagcgatgctggcctcgctgagcttagacgagtag
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