Halomicrobium sp. LC1Hm: LC1Hm_0401
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Entry
LC1Hm_0401 CDS
T06261
Symbol
dppA
Name
(GenBank) ABC-type transport system, periplasmic component
KO
K02035
peptide/nickel transport system substrate-binding protein
Organism
hall
Halomicrobium sp. LC1Hm
Pathway
hall02024
Quorum sensing
Brite
KEGG Orthology (KO) [BR:
hall00001
]
09140 Cellular Processes
09145 Cellular community - prokaryotes
02024 Quorum sensing
LC1Hm_0401 (dppA)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
02000 Transporters [BR:
hall02000
]
LC1Hm_0401 (dppA)
Transporters [BR:
hall02000
]
ABC transporters, prokaryotic type
Peptide and nickel transporters
Peptides/nickel transporter
LC1Hm_0401 (dppA)
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Paralog
Gene cluster
GFIT
Motif
Pfam:
SBP_bac_5
DUF4357
Motif
Other DBs
NCBI-ProteinID:
QGA81465
UniProt:
A0A5Q0UKF9
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All DBs
Position
363499..365364
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AA seq
621 aa
AA seq
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MDMADKSNDYKDVLSRRRFVALTGAAGAAALAGCDGSEGTDDSTPADEGGDDTSTEDGSS
TEDDSMEVADVRHLSGTNLSPADIQFNPWGQNTAQISNELIFDPFAEFNYATAEYEPAII
EEWEFTGDAFEMVLQEGATWHDGEPVTAQDLATYLRLDRESGSSIWDWGSDVEEIDERTV
AITVEGDINPSLIEFSVMENRLATKHSRYGDILSEVQEAEDTTALTEFVDDEPIGNGIFQ
YGEADEQVILTERHAGHPNADNVNFKEYAFQYFDGNTAIHQALLSGNIESMFAIYTPGNV
VSDLPDAVNEYRTPRNGGVGLIPNHNHDHLGRRAVRQAIAYAMDRTQVAANSDPRTKVAP
RVPTALPNAQLENWLGDAMDDFETYGRESSETEQAATVLEEAGYSRNGDDIWEDEDGNTL
SFELIAPGGWSDWVTAMESVADQLNAAGMDVNFSTVPFGELGGSDGRWANGNFDATAEYW
TAAFARAAHPYHNLRHQMVDPGATLRPNGYAYPAAVEARNGNEADITVPARDGSGELTVN
PVEDVETLGTTSDSETEAEIALELLWVSNQDLPMIPIQEGLNQTFISSERFDVPAEDAEV
AQVQYANTWLPRQGEMTYNGN
NT seq
1866 nt
NT seq
+upstream
nt +downstream
nt
gtggatatggcagacaagtccaacgactacaaagacgttcttagccgccgccggttcgtc
gcgctgacaggcgcggcaggtgctgctgcacttgccggctgtgacggctcggaaggtacg
gatgacagtacgccggccgacgagggtggggacgacacgtcgaccgaagatggttcttcg
accgaagacgactcgatggaagtcgccgacgttcgtcacctcagcgggacgaacctctcg
cccgcggacatccagttcaacccctggggccagaacacggcacagatctcgaacgagctc
atcttcgatccgttcgcggagttcaattacgccactgccgagtatgagcccgcgatcatc
gaggagtgggagttcacgggcgatgccttcgagatggtgcttcaggagggcgcgacctgg
cacgacggcgagccggtcaccgcccaggacctggccacctatctgcgactcgaccgcgag
tccggtagctcgatctgggactggggcagcgacgtcgaggagatcgacgagcggactgtc
gccatcacggtcgaaggcgatatcaacccgtcgctgatcgagttctccgtgatggagaac
cgactcgccaccaagcactcccgctacggtgatattctctcggaggttcaggaggcagaa
gacaccacggcattgaccgagttcgtcgacgacgagccgatcggcaacggcatcttccag
tacggcgaagccgacgagcaggtgatcctgacggagcgtcacgccggtcacccgaacgcg
gacaacgtcaacttcaaagagtacgcgttccagtacttcgacggcaacacggcgatccac
caggcgctgctctcgggcaacatcgagagcatgttcgccatctacacgccgggcaacgtc
gtctccgacctgcccgacgcggtgaacgagtaccgcacgccccgcaacggcggcgtcggg
ttgatccccaaccacaaccacgaccacctcggtcgacgtgcggtccgccaggcgatcgcg
tacgccatggaccggacgcaggtcgcagccaactccgacccgcgcaccaaggtcgctccg
cgcgtccccacggcactgcccaacgcccagctcgagaactggctcggcgacgccatggac
gacttcgagacgtacggtcgcgagtccagtgagaccgagcaggccgccaccgtgctcgaa
gaggccggctacagccgcaacggcgacgatatctgggaggacgaggacggcaacaccctc
tccttcgagctcatcgcgcccggtggctggtccgactgggtcaccgcgatggagtccgtg
gccgaccagctcaacgccgccgggatggacgtgaacttctcgacggtgccgttcggcgaa
ctcggtggctccgacggtcgctgggcgaacgggaacttcgacgcgaccgccgagtactgg
acggcggcgttcgcgcgtgctgctcacccgtaccacaacctgcgccaccagatggtcgat
cccggtgcgacacttcgtcccaacggctacgcctatccggctgctgtcgaggcccgcaac
ggcaacgaagccgacatcaccgttccggcacgcgacggctccggcgagctgacggtcaac
cccgtcgaagacgtcgaaacgctcgggaccacctccgacagcgagaccgaggccgagatc
gcgctcgaactcctgtgggtctcgaaccaggatctcccgatgatcccgatccaggagggg
ctgaaccagacgttcatctcctcggagcggttcgacgtgccggccgaagacgccgaagtc
gcacaggtgcagtacgccaacacctggctcccgcgccagggcgagatgacgtacaacggt
aactaa
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