Halomicrobium sp. LC1Hm: LC1Hm_0502
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Entry
LC1Hm_0502 CDS
T06261
Symbol
erf1
Name
(GenBank) Peptide chain release factor eRF1
KO
K03265
peptide chain release factor subunit 1
Organism
hall
Halomicrobium sp. LC1Hm
Pathway
hall03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
hall00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
LC1Hm_0502 (erf1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
hall03019
]
LC1Hm_0502 (erf1)
03012 Translation factors [BR:
hall03012
]
LC1Hm_0502 (erf1)
Messenger RNA biogenesis [BR:
hall03019
]
Eukaryotic type
mRNA surveillance and transport factors
Surveillance factors
Surveillance complex
LC1Hm_0502 (erf1)
Translation factors [BR:
hall03012
]
Eukaryotic type
Release factors
LC1Hm_0502 (erf1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
eRF1_2
eRF1_3
eRF1_1
acVLRF1
baeRF_family10
T4bSS_IcmS
zf_UBZ
Motif
Other DBs
NCBI-ProteinID:
QGA81566
UniProt:
A0A5Q0UJ22
LinkDB
All DBs
Position
complement(455957..457210)
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AA seq
417 aa
AA seq
DB search
MSESEQEQSDKQKYEFKKVIEKLKGYDGSGTQLVTIYVPEDKQISDVVAHVTQEHSEASN
IKSKQTRTNVQDALTSIKDRLRYYGNTPPENGMVLFSGAVDSSGGRTEMVTEVLESPPDP
IESFRYHCDSNFLTGPLEEMLADKGLFGLIVLDRREANVGWLKGKRVEPVKSASSLVPGK
QRKGGQSAQRFARLRLEAIDNFYQEVAGMANDLFVSRRHEMNGILVGGPSPTKDEFLDGD
YLHHELGDNVLGKFDVAYTDESGLYDLVDAASEVLAEHEILQDKEAMEEFFKELHDGDLA
TYGFGPTRENLIMGSVDRLLISEDLRKDVLTYTCENGHDEYEMVDRSASIDDHDCSRCGE
TVPAEEAEREDAIDHLMEIAQQRGSETLFISTDFEKGEQLLSAFGGVAGLLRYSTGV
NT seq
1254 nt
NT seq
+upstream
nt +downstream
nt
atgagcgagtccgagcaggagcaatccgacaaacaaaaatacgagttcaagaaggtcatc
gagaagctcaaggggtacgacggatccgggacgcaactggtgacgatctacgtgccagag
gacaagcagatcagcgacgtcgtcgcccacgtcacacaggaacactcggaagcgtccaac
attaagtcgaagcagacccggaccaacgtccaggacgccctgaccagcatcaaagaccgg
ctccgctactacgggaacacgccgcccgagaacgggatggtcctgttctccggagcggtc
gactccagtggcggacgcaccgagatggtcacggaggtcttagagagtccgcccgacccc
atcgagtcgtttcgctaccactgtgactccaacttcctcaccggcccactggaggagatg
ctggcggacaagggactgttcggcctgatcgtcctcgaccgccgcgaggcgaacgtcggc
tggctcaagggcaagcgcgtcgagccggtcaagtccgcgtcctcgctggtcccgggcaag
cagcgaaaaggtggccagtccgcacagcggttcgcccgactgcgcctggaagccatcgac
aacttctaccaggaagtcgcagggatggcaaacgacctgttcgtctcgcgtcgccacgag
atgaacggcatcctcgtgggcggtccctccccgaccaaagacgagttcctcgacggcgac
tacctccaccacgaactcggtgacaacgtcctcgggaagttcgacgtggcctacaccgac
gagtccggactgtacgatctcgtcgacgccgcaagcgaggtcctcgccgagcacgagatt
ctccaggacaaggaggccatggaagagttcttcaaggaactccacgacggcgatctggcg
acctacggcttcggtccgacccgcgagaacctcatcatggggtcggtcgaccgcctgctc
atctccgaagatctccggaaggacgtgctcacctacacctgtgagaacggccacgacgag
tacgagatggtcgatcggtcggcgtcgatcgacgaccacgactgctcgcggtgtggcgag
accgtccccgccgaggaggccgaacgcgaggatgcgatcgaccacctcatggagatcgct
cagcaacgcggcagcgagacgctgttcatctcgacggacttcgagaagggcgaacagctc
ctgtcggccttcggcggcgtcgccggactcctgcgctactcgaccggcgtctag
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