Halomicrobium sp. LC1Hm: LC1Hm_0870
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Entry
LC1Hm_0870 CDS
T06261
Symbol
sua7-3
Name
(GenBank) Transcription initiation factor TFIIB, Brf1 subunit/Transcription initiation factor TFIIB
KO
K03124
transcription initiation factor TFIIB
Organism
hall
Halomicrobium sp. LC1Hm
Pathway
hall03022
Basal transcription factors
Brite
KEGG Orthology (KO) [BR:
hall00001
]
09120 Genetic Information Processing
09121 Transcription
03022 Basal transcription factors
LC1Hm_0870 (sua7-3)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
hall03021
]
LC1Hm_0870 (sua7-3)
Transcription machinery [BR:
hall03021
]
Eukaryotic type
RNA polymerase II system
Basal transcription factors
TFIIB
LC1Hm_0870 (sua7-3)
Prokaryotic type
Archaeal type
TFB
LC1Hm_0870 (sua7-3)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TFIIB
Zn_Ribbon_TF
RB_B
BRF2-like_C_cyclin_rpt
Motif
Other DBs
NCBI-ProteinID:
QGA81932
LinkDB
All DBs
Position
complement(815958..816917)
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AA seq
319 aa
AA seq
DB search
MRGVTPDVLPSNMIGTPYASGFDEETSNQCSGCCPECNGEIETDGGERTCRECGLVIDGY
GIAHDFEPRSFEDGPNRERTGAPLTPARHDRGLSSQIGRWKDGKQQSLSNKKRRQLGRLR
REHNRARFQSKAERNLAFACTEIARIVAALGMTRETTEFACTLFRQAQDEELLIGRSLEA
FAAGSIYAVCRCRSLPDSAQEIASVARCEESALRNAYSVLNVEFGLETSIQQPQQLLPKF
ADQLDVPAGVRRRARDLADVAVDEGLANGRHPAGLAGAALYLACGEHDLSVTQSEVASVA
DVSIVTIRQRRDELQAVLE
NT seq
960 nt
NT seq
+upstream
nt +downstream
nt
gtgcggggcgtcacaccagacgtcctgccttcgaatatgatcggaactccatacgcgagt
ggcttcgacgaagagacatccaaccaatgcagtggctgctgtcccgaatgcaatggcgag
atcgaaaccgatggtggagagcgcacctgtcgggagtgtggactcgtcatcgatggctac
gggattgcgcacgatttcgaaccacggtcgttcgaggacggaccgaacagggaacggacg
ggcgcgccgttgacgcccgcacgtcacgatcggggcctctccagtcagattggacggtgg
aaagatgggaagcaacagtccctctccaacaagaaacggcgtcaactcggtcgactgcgt
cgcgaacacaaccgggcacgtttccagtcgaaagcagaacggaatctcgccttcgcctgt
acggagatcgcacggatcgtcgccgctctggggatgactcgcgagacgaccgagttcgcc
tgtacactctttcggcaggctcaggacgaagagttgctgatcggacggtcgctcgaagcg
ttcgcagcggggagtatctatgcagtgtgtcgatgccgatcactcccagacagcgcccaa
gagatcgcaagcgtcgcgcggtgtgaggagtcggcactacggaacgcatatagcgttctg
aacgtcgaattcggtctggagacgtcgatccagcagcctcagcagttgctcccgaaattc
gccgatcaactcgatgtgccagcgggcgtgcgtcgacgagcgcgtgacctcgctgacgtg
gctgtcgacgagggactggcgaacggacgccaccccgcaggacttgcaggcgctgcactc
tatctcgcctgcggggaacacgacctgtcggtcacacagtccgaggtcgcctccgtcgcg
gacgtctcgatcgtgacgattcgtcagcgtcgggacgagcttcaggcggtgctggaatga
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