Halomicrobium sp. LC1Hm: LC1Hm_1113
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Entry
LC1Hm_1113 CDS
T06261
Symbol
gtpBP1
Name
(GenBank) GTPase
KO
K03231
elongation factor 1-alpha
Organism
hall
Halomicrobium sp. LC1Hm
Pathway
hall03013
Nucleocytoplasmic transport
Brite
KEGG Orthology (KO) [BR:
hall00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
LC1Hm_1113 (gtpBP1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
hall03019
]
LC1Hm_1113 (gtpBP1)
03016 Transfer RNA biogenesis [BR:
hall03016
]
LC1Hm_1113 (gtpBP1)
03012 Translation factors [BR:
hall03012
]
LC1Hm_1113 (gtpBP1)
04131 Membrane trafficking [BR:
hall04131
]
LC1Hm_1113 (gtpBP1)
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
hall04147
]
LC1Hm_1113 (gtpBP1)
Messenger RNA biogenesis [BR:
hall03019
]
Eukaryotic type
mRNA surveillance and transport factors
Factors involved in mRNA localization
Trans-acting binding proteins
LC1Hm_1113 (gtpBP1)
Transfer RNA biogenesis [BR:
hall03016
]
Eukaryotic type
tRNA transport factors
tRNA export factors
LC1Hm_1113 (gtpBP1)
Translation factors [BR:
hall03012
]
Eukaryotic type
Elongation factors
LC1Hm_1113 (gtpBP1)
Membrane trafficking [BR:
hall04131
]
Autophagy
Chaperone mediated autophagy (CMA)
Other CMA associated proteins
LC1Hm_1113 (gtpBP1)
Exosome [BR:
hall04147
]
Exosomal proteins
Proteins found in most exosomes
LC1Hm_1113 (gtpBP1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
GTP_EFTU
GTP_EFTU_D2
GTP_EFTU_D3
GTP-eEF1A_C
MeaB
EF-G_D2
RsgA_GTPase
ATP_bind_1
Motif
Other DBs
NCBI-ProteinID:
QGA82171
UniProt:
A0A5Q0UL95
LinkDB
All DBs
Position
1029312..1030961
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AA seq
549 aa
AA seq
DB search
MLRRAIERGEQEGGSVEFKERLTEDLHLAEGRLESLAAQLRHRVLSGDGEATYVVGVTDD
GGLAGIAPEAFSESMDVLSLLADEAGAHIEAVQTWGVDSASQTTDPDGPPATADTDTDTA
PEGIVGVATIREGAVLEDDDHIVVGTAGHVDHGKSTLVGTLVTGSADDGEGSTRSYLDVQ
PHEVERGLSADLSYGVYGFEDDEPVRMDNPDRKDDRARVVEESDRLVSFVDTVGHEPWLR
TTIRGLVGQKLDYGLLTVAADDGPTKTTREHLGILLATELPTIVAITKADLVSDERVAEV
EREVERALRDVDKTPLRVERHGVDAAIEEISETVVPVVTTSAVTMDGIDQLDAMFERLPK
TAGESGAFRMYVDRSYNVQGVGAVASGTIKSGTVEAGDELLLGPMPDGTFREVEVRSIEM
HYHRVDEAKAGRIVGIALKGVTEPALERGMVLLPRDADPDPVREFEAEVMVLNHPTRIGD
GYEPVVHVETISEAAQFFPTDGQLLPGDSGEATVRFKFRSYLVEEGQRFVFREGRSKGVG
TITSVETGD
NT seq
1650 nt
NT seq
+upstream
nt +downstream
nt
gtgctccgccgtgcgatcgagcgcggcgaacaggagggcggcagcgtcgagttcaaagag
cggctcaccgaagacctccacctcgccgagggtcggctggagagcctcgccgcacagttg
cgccaccgcgtcctctccggtgacggggaagcgacctacgtcgtcggcgtcacggacgac
gggggcctcgccgggattgccccggaggcgttctccgagtcgatggacgtgctctcgctg
ctggccgacgaggccggcgcacacatcgaggccgtccagacctggggggtcgacagcgca
tcgcagacgactgacccagacggtcccccggcgacggccgacacggacacagacaccgcc
ccagaggggatcgtcggcgtcgcaacgatccgtgagggagcggtgttggaagacgacgac
cacatcgtcgtcggcaccgcgggccacgtcgaccacgggaagtcgacgctggtgggcacg
ctcgtcaccgggagcgccgacgacggtgagggcagcacccgctcgtatctggacgtgcaa
ccacacgaggtcgagcgcggcctgtcggccgacctctcctacggcgtctacggcttcgag
gacgacgagccggtccgcatggacaaccccgaccgcaaggacgatcgggcacgcgtcgtc
gaagagtccgaccgcctcgtcagcttcgtcgacaccgtcggccacgagccgtggcttcgg
acgacgattcggggactcgtcggacagaagctcgactacgggctgctgaccgtagcggcc
gacgacggaccgacgaagacgaccagagagcacctgggcatcctgctcgcgacggagctg
ccgacgatcgtcgccatcacgaaggcagacctcgtcagcgacgagcgcgtcgccgaggtc
gagcgggaggtcgaacgggcgctgcgagacgtggacaagaccccgttgcgcgtcgagcgc
cacggcgtcgacgccgcgatcgaagagatctccgagaccgtcgttcccgtcgtgacgacg
agcgccgtcacgatggacgggattgaccagctcgacgcgatgttcgagcgcctccccaag
actgccggcgagagcggcgcgttccggatgtacgtcgatcgcagctacaacgtccagggc
gtcggcgcggtcgcctccgggacgatcaagtcgggaacggtcgaggccggcgacgagttg
ctgctgggaccgatgcccgacggcaccttccgcgaggtcgaagtccgatcgatcgagatg
cactaccaccgcgtcgacgaggccaaagccggccgcatcgtcggcatcgcactcaagggc
gtcacggagcccgccctcgaacgcgggatggtgttgctgccccgcgacgccgatccggac
ccggtcagggagttcgaggcggaggtgatggtgctcaaccacccgacgcggatcggcgac
ggctacgagccggtcgtccacgtcgagacgatcagcgaggccgcccagttcttcccgacc
gacggccagctgttgcccggcgacagcggcgaggccacggtccgcttcaagttccgctcg
tacctcgtcgaggaaggccagcggttcgtcttccgcgaaggccgatcgaaaggtgtcggg
acgatcaccagcgtcgagacgggcgactga
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