Halomicrobium sp. LC1Hm: LC1Hm_1423
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Entry
LC1Hm_1423 CDS
T06261
Symbol
cdc48-2
Name
(GenBank) ATPase of the AAA+ class, CDC48 family
KO
K13525
transitional endoplasmic reticulum ATPase
Organism
hall
Halomicrobium sp. LC1Hm
Pathway
hall04141
Protein processing in endoplasmic reticulum
Brite
KEGG Orthology (KO) [BR:
hall00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
04141 Protein processing in endoplasmic reticulum
LC1Hm_1423 (cdc48-2)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
hall03019
]
LC1Hm_1423 (cdc48-2)
03009 Ribosome biogenesis [BR:
hall03009
]
LC1Hm_1423 (cdc48-2)
04131 Membrane trafficking [BR:
hall04131
]
LC1Hm_1423 (cdc48-2)
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
hall04147
]
LC1Hm_1423 (cdc48-2)
Messenger RNA biogenesis [BR:
hall03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Ran-mediated transport factors
LC1Hm_1423 (cdc48-2)
Ribosome biogenesis [BR:
hall03009
]
Eukaryotic type
Pre-60S particles
Ribosome quality control proteins
LC1Hm_1423 (cdc48-2)
Membrane trafficking [BR:
hall04131
]
SNARE
SNARE associated proteins
Others
LC1Hm_1423 (cdc48-2)
Autophagy
Aggrephagy
Other aggrephagy associated proteins
LC1Hm_1423 (cdc48-2)
Exosome [BR:
hall04147
]
Exosomal proteins
Exosomal proteins of haemopoietic cells (B-cell, T-cell, DC-cell, reticulocyte, and mast cell)
LC1Hm_1423 (cdc48-2)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
AAA
AAA_lid_3
CDC48_N
CDC48_2
RuvB_N
AAA_16
AAA_2
AAA_5
AAA_14
TIP49
AAA_22
AAA_33
nSTAND3
RNA_helicase
NPHP3_N
AAA_7
AAA_28
IstB_IS21
DUF815
Mg_chelatase
ABC_tran
AAA_3
ATPase
TsaE
AAA_18
AAA_lid_PRS2_C
AAA_24
AAA_17
Parvo_NS1
Sigma54_activat
NACHT
AAA_30
AAA_11
AAA_25
NB-ARC
Zeta_toxin
PhoH
SLFN-g3_helicase
AAA_19
bpMoxR
Bac_DnaA
NTPase_1
ATPase_2
ATP-synt_ab
Zot
Motif
Other DBs
NCBI-ProteinID:
QGA82471
UniProt:
A0A5Q0UM09
LinkDB
All DBs
Position
1315618..1317891
Genome browser
AA seq
757 aa
AA seq
DB search
MKLTVKPLKQKDAGRGLAAVDRAAMDEMDLENGDYIVIDGEGGRAVARVWPGYPEDSGKN
VVRIDGQLRQEAGVGIDDQIEVEKADVQVAKQVTVALPQNLRVRGNVGPMIRNNLSGQAV
TQGQTVPVSFGLGPLSSMSGQKIPLRIAETDPSGTVVVTDQTDIEVSEKPAEQIAGDAPT
ESGGEATPDVAYEDIGGLDSELEQVREMIELPMRHPELFQQLGIEPPKGVLLHGPPGTGK
TLMAKAVANEIDAHFTTISGPEIMSKYYGESEEQLREVFEEAEENAPAIVFIDEIDSIAP
KRGETQGDVERRVVAQLLSLMDGLDERGDVIVIGATNRVDAIDPALRRGGRFDREIEIGV
PDKEGRKEILQVHTRGMPLSEDIDLESYAENTHGFVGADLAQLTKEGAMNALRRIRPDID
LEADEIDAEVLESLEVSKQDFKEALKGIEPSALREVFVEVPDTSWESVGGLEDTKERLRE
TIQWPLEYPGVFEQMDLQAAKGVLLYGPPGTGKTLLAKAVANEAQSNFISIKGPELLNKF
VGESEKGVREVFSKARENAPTVVFFDEIDSIAAERGSGGGDSQVGERVVSQLLTELDGLE
AMEDVVVIATTNRPDLIDSALIRPGRLDRHVHVPVPDEDARRAIFQVHTRGKPLADGVDL
DQLARKTEGYVGADIEAVAREASMAATREFINSVDPDDIDDSVSNVRITMDHFQQALDEV
GPSVDEDVRERYDEIEERFDHAEAELDDGETVSRTFQ
NT seq
2274 nt
NT seq
+upstream
nt +downstream
nt
atgaaacttaccgtcaaaccactcaagcagaaagacgccggacgcggtctcgcggccgtc
gaccgggcagcgatggacgagatggacctggagaacggcgactacatcgtcatcgacggc
gagggcggtcgcgcggtcgcccgcgtctggcccggctaccccgaagacagcggcaagaac
gtcgtccggatcgacggccagctccgacaggaagccggcgtcggcatcgacgaccagatc
gaggtcgagaaggccgacgtacaggtcgcaaagcaggtcaccgtcgccctgccccagaac
ctccgggtgcggggcaacgtcggtccgatgatccgcaacaacctcagcggccaggcggtc
acgcagggccagacggtgcccgtgagcttcgggctcggtccgctttcgagcatgagcggc
cagaagatcccgctgcggatcgccgagaccgacccctcggggacggtcgtggtgaccgac
cagaccgacatcgaggtcagcgagaagcccgccgaacagatcgcgggcgacgccccgacc
gagagcggcggcgaagccacgccggacgtggcctacgaggacatcggcggcctcgacagc
gaactcgaacaggtccgcgagatgatcgagctgccgatgcgccaccccgaactgttccag
cagctcggcatcgagccgccgaaaggcgtcctcctgcacggcccgccgggcaccgggaag
acgctgatggccaaggccgtcgccaacgagatcgacgcccacttcacgaccatcagcggc
ccggagatcatgtcgaagtactacggcgagagcgaagagcagctccgcgaggtcttcgag
gaggccgaggagaacgcccccgccatcgtcttcatcgacgagatcgactcgatcgcgcca
aagcgcggcgagacccagggcgacgtggaacgccgcgtcgtcgcacagctcctctcgctg
atggacgggctcgacgagcgcggtgacgtgatcgtcatcggcgcgaccaaccgcgtcgac
gccatcgatcccgcactgcgccgcggcggccgcttcgaccgcgagatcgagatcggcgtc
ccggacaaggagggccgcaaggagatccttcaggtccacacccgcggcatgccactctcg
gaggacatcgacctcgagtcctacgccgagaacacgcacggcttcgtcggtgcggacctc
gcacagctgaccaaggagggcgcgatgaacgcgctgcggcgcatccgccccgacatcgac
ctcgaagccgacgagatcgacgccgaggtgctcgaatcgctggaggtctcgaagcaggac
ttcaaagaggcgctgaaggggatcgaacccagcgcgctgcgcgaggtcttcgtcgaagtc
ccagacacctcctgggagtccgtcggcggcctcgaagacaccaaagagcgcctgcgcgag
acgatccagtggccactggagtaccccggggtcttcgagcagatggacctgcaggcagcc
aagggcgtcttgctctacggcccgccgggcaccgggaagacgctgctggccaaggccgtc
gccaacgaggcccaatcgaacttcatctcgatcaagggccccgaactgctgaacaagttc
gtcggcgagtccgagaagggcgtgcgcgaagtgttcagcaaggcccgagagaacgccccg
accgtcgtcttcttcgacgagatcgactcgatcgcggccgagcgtggctcgggcggcggc
gactcgcaggtcggcgaacgagtcgtctcccagctgctgaccgaactcgacgggctcgaa
gcgatggaggacgtggtcgtgatcgccacgaccaaccggcccgacctcatcgactcggcg
ctgattcgccccggtcgactggaccgccacgtccacgtcccggtccccgacgaggacgct
cgccgggcgatcttccaggtccacacccgtggcaagccactggccgacggcgtcgacctc
gaccagctcgcccggaagaccgaggggtacgtcggtgccgacatcgaagcggtcgcccgc
gaggcctcgatggccgcgacccgggagttcatcaacagcgtcgatcccgacgacatcgac
gactccgtcagcaacgtccgcatcacgatggaccacttccagcaggcgcttgacgaagtt
ggaccgagcgtcgacgaagacgtgcgagagcgctacgacgagatcgaagaacggttcgac
cacgccgaggcggagctggacgacggcgagacggtctcgcgaacgttccagtag
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