Halomicrobium sp. LC1Hm: LC1Hm_1490
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Entry
LC1Hm_1490 CDS
T06261
Symbol
tFA1
Name
(GenBank) Transcription initiation factor IIE, alpha subunit
KO
K03136
transcription initiation factor TFIIE subunit alpha
Organism
hall
Halomicrobium sp. LC1Hm
Pathway
hall03022
Basal transcription factors
Brite
KEGG Orthology (KO) [BR:
hall00001
]
09120 Genetic Information Processing
09121 Transcription
03022 Basal transcription factors
LC1Hm_1490 (tFA1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
hall03021
]
LC1Hm_1490 (tFA1)
Transcription machinery [BR:
hall03021
]
Eukaryotic type
RNA polymerase II system
Basal transcription factors
TFIIE
LC1Hm_1490 (tFA1)
Prokaryotic type
Archaeal type
TFE
LC1Hm_1490 (tFA1)
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TFIIE_alpha
zf_UBZ
DUF7129
Sigma70_r3
Zn_ribbon_8
HypA
RUBY_RBDX
CpXC
Zn_ribbon_6
Zn_ribbon_TiaS
DZR
DUF7560
NRDD
Motif
Other DBs
NCBI-ProteinID:
QGA82537
UniProt:
A0A5Q0ULK0
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All DBs
Position
complement(1374037..1374576)
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AA seq
179 aa
AA seq
DB search
MAFEDLLEDPVIQKYLHELVGPKGMPVAAAPPDGEVTDEELAEELGLELNDVRRALFILY
ENDLASYRRLRDEDSGWLTYLWTFKYENIPEKLEEEMHRLLDALEDRESYERDNEFYLCE
RCGIRFEFDEAMEFGFQCPECGDQVESMENTRLVDAMDERIAKLRDELNVDHEREDAEA
NT seq
540 nt
NT seq
+upstream
nt +downstream
nt
atggcttttgaggacctcctggaggatcctgtgatacagaaatacctccacgaactcgtc
ggaccgaaagggatgccggtcgccgccgcgccgccggacggcgaagtgaccgacgaagaa
ctcgccgaagagctgggactggagctcaacgacgtgcgccgggcgctgttcattctctac
gagaacgacctggcgtcgtatcgacgactccgagacgaggactcggggtggctcacctac
ctctggacgttcaagtacgagaacatcccagagaagctcgaagaggagatgcaccgcctg
ctcgacgcgctcgaagaccgcgagtcctacgagcgagacaacgagttctacctctgtgag
cgctgtggcatccgcttcgagttcgacgaggcgatggagttcggtttccagtgtcccgag
tgcggtgaccaggtcgaatcgatggagaacacgcgactcgtcgacgccatggacgagcgg
atcgcgaagctccgcgacgaactcaacgtcgaccacgaacgagaggacgccgaagcctga
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