Halomicrobium sp. LC1Hm: LC1Hm_1805
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Entry
LC1Hm_1805 CDS
T06261
Symbol
phrB2
Name
(GenBank) Deoxyribodipyrimidine photolyase
KO
K01669
deoxyribodipyrimidine photo-lyase [EC:
4.1.99.3
]
Organism
hall
Halomicrobium sp. LC1Hm
Brite
KEGG Orthology (KO) [BR:
hall00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
hall03400
]
LC1Hm_1805 (phrB2)
Enzymes [BR:
hall01000
]
4. Lyases
4.1 Carbon-carbon lyases
4.1.99 Other carbon-carbon lyases
4.1.99.3 deoxyribodipyrimidine photo-lyase
LC1Hm_1805 (phrB2)
DNA repair and recombination proteins [BR:
hall03400
]
Eukaryotic type
SSBR (single strand breaks repair)
Direct repair
LC1Hm_1805 (phrB2)
Prokaryotic type
LC1Hm_1805 (phrB2)
BRITE hierarchy
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Paralog
Gene cluster
GFIT
Motif
Pfam:
FAD_binding_7
DNA_photolyase
DUF1707
Usp
Motif
Other DBs
NCBI-ProteinID:
QGA82847
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All DBs
Position
complement(1670592..1671992)
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AA seq
466 aa
AA seq
DB search
MRIHWHRRDLRTTDNAGLAAATADSPVVPVFVFDDAVLDHAAPPRVAFMLDALDSLRAQY
RDRGSDLVIARGDPTAEIPRLAEAFGADGVTWGEAYSGLGIERDIAVRQALDDAGVEREA
VTDSVLHRPGEITTNDGDPYSVFTYFGRKWHDREKDEPYDAPSPDELADVSGDPLPSVDD
LGFEDPRAEIPPAGTEPARALLDAFCEDDIYRYEGRRDYPADDCTSRLSAHLKFGTIGIR
EVYERTASAAAAANDEERRESVEEFQSQLAWREFYTQVLFANRSVVTDDYKSYERPLQWR
DDPEALQAWKDGETGYPIVDAGMRQLRQEAFMHNRVRMIVASFLTKDLLIDWRAGYEWFK
QRLVDHDTANDNGGWQWAASTGTDAQPYFRIFNPMTQGERYDPDAEYIKTYVPELRDAEP
SVIHEWPDLSPTQRRNAAPEYPDPIVDHGERRDQALEMFETARGES
NT seq
1401 nt
NT seq
+upstream
nt +downstream
nt
atgcgaatccactggcatcgacgcgatctccggacgaccgacaacgccggcctggccgcg
gcgacggccgacagcccggtcgtcccggtgttcgtcttcgacgacgccgtcctcgaccac
gccgcaccgccccgcgtggcgttcatgctggacgcgctcgactcgctgcgggcacagtac
cgtgaccgcgggagcgacctcgtgatcgctcgcggcgatccgacggccgagatcccgcgg
ctggccgaggcgttcggagccgacggcgtgacctggggcgaagcctactccggactcggc
atcgagcgcgacatcgccgtccgacaggccctcgacgacgcgggcgtcgaacgcgaggcg
gtcaccgattcggtcctccatcgccccggcgagatcacgaccaacgacggcgatccctac
tcggtgttcacctacttcgggcggaagtggcacgaccgggagaaagacgagccctacgac
gcgcccagcccggacgaactggccgacgtgtccggcgaccccctgccgtcggtggatgac
ctgggcttcgaagacccacgggcagagatccccccagccgggacggagccggcccgtgct
ctcctcgacgcgttctgcgaggacgacatctatcggtacgagggccgccgggactacccc
gcagacgactgtacctcacggctctccgcacacctcaagttcgggacgatcggtatcagg
gaggtgtacgagcggaccgcgagcgcggcggcagcggccaacgacgaggaacggcgcgaa
tccgtcgaggagttccagtcgcagttggcctggcgggagttctacacccaggtcctcttt
gccaaccggtcggtcgtcacagacgactacaagtcctacgagcgcccactccagtggcgc
gacgaccccgaggcgctccaggcctggaaggacggcgagacggggtacccgatcgtcgac
gccgggatgcgccagctccgccaggaggcgttcatgcacaaccgcgtccggatgatcgtc
gcctcctttctcaccaaggacctgctgatcgactggcgagcgggatacgagtggttcaaa
cagcgtctggtcgaccacgacaccgcgaacgacaacggcgggtggcagtgggcggcctcg
acgggcaccgacgcacagccgtacttccgaatcttcaacccgatgacgcagggcgagcgg
tacgaccccgacgcggagtacatcaagacgtacgtgcccgagctgcgcgacgccgagccg
tcggtgatccacgagtggcccgatctcagcccgacccagcgtcgcaacgccgccccggag
taccccgatcccatcgttgaccacggcgagcgacgcgaccaggccctggagatgttcgag
actgcccgcggcgagagttag
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