Halomicrobium sp. LC1Hm: LC1Hm_2068 Help Entry LC1Hm_2068        CDS       T06261                                  Symbol cdc9 Name (GenBank) ATP-dependent DNA ligase   KO K10747   DNA ligase 1 [EC:6.5.1.1 6.5.1.6 6.5.1.7] Organism hall  Halomicrobium sp. LC1Hm Pathway hall03030   DNA replication hall03410   Base excision repair hall03420   Nucleotide excision repair hall03430   Mismatch repair Brite KEGG Orthology (KO) [BR:hall00001]  09120 Genetic Information Processing   09124 Replication and repair    03030 DNA replication     LC1Hm_2068 (cdc9)    03410 Base excision repair     LC1Hm_2068 (cdc9)    03420 Nucleotide excision repair     LC1Hm_2068 (cdc9)    03430 Mismatch repair     LC1Hm_2068 (cdc9)  09180 Brite Hierarchies   09182 Protein families: genetic information processing    03032 DNA replication proteins [BR:hall03032]     LC1Hm_2068 (cdc9)    03400 DNA repair and recombination proteins [BR:hall03400]     LC1Hm_2068 (cdc9) Enzymes [BR:hall01000]  6. Ligases   6.5  Forming phosphoric-ester bonds    6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)     6.5.1.1  DNA ligase (ATP)      LC1Hm_2068 (cdc9)     6.5.1.6  DNA ligase (ATP or NAD+)      LC1Hm_2068 (cdc9)     6.5.1.7  DNA ligase (ATP, ADP or GTP)      LC1Hm_2068 (cdc9) DNA replication proteins [BR:hall03032]  Eukaryotic type   DNA Replication Elongation Factors    Other elongation factors     LC1Hm_2068 (cdc9)  Prokaryotic type    Elongation factors (archaeal)     Other elongation factors      LC1Hm_2068 (cdc9) DNA repair and recombination proteins [BR:hall03400]  Eukaryotic type   SSBR (single strand breaks repair)    BER (base exicision repair)     Long Patch-BER factors      LC1Hm_2068 (cdc9)    NER (nucleotide excision repair)     Other NER factors      LC1Hm_2068 (cdc9)    MMR (mismatch excision repair)     Other MMR factors      LC1Hm_2068 (cdc9) BRITE hierarchy SSDB OrthologParalogGene clusterGFIT Motif Pfam:  DNA_ligase_A_M DNA_ligase_A_N DNA_ligase_A_C RNA_ligase Lambda_tail_I Motif Other DBs NCBI-ProteinID:  QGA83104 UniProt:  A0A5Q0UNE1 LinkDB All DBs Position 1907987..1909648 Genome browser AA seq 553 aa AA seqDB search MEFAEFAATAAEIEGESADIATTELVTGLLADAGDDLSILTRLVQGRVFPAYEATKLDIG PKLCYEALARAAGRNVAVDDIEARVADVGEIGAVAADLDLGGQQGLAAFGAGSQSPLTVA EVADELAAIASASGSGSRDTKVETLFGLFNRASDEEARYLARIVLSEMRIGVGEGTVRDA IAAAFDAPVDAVERALQVTNDYGNVARVARDEGADGLADLELTIGRPIKAMLAQAGTVTE ALEDWETAAVEWKYDGARVQVHYDGETVRLFSRNMEEVTDPLPEVVSAVEDAVDGPVILD GEVVAVDGDGDPLPFQEVLRRFRRKHDVARASENVGVRLHAFDCLHADGRDLLDAPLVDR RDALDAVLGDADAIRSTCWLADDTGRIEDIADEALAAGHEGIMLKDPDSTYSPGKRGKHW RKRKPDVETLDLVVTGAEWGEGRRATYLGTFELSARTDDGYAPVGNVATGITDEQLATLT ELLEPHVTREIGQRVEIEPAVVFEVGYEEIQTSSTYESGYALRFPRFVEVRSDKAVADGD TLERIERLAAQQG NT seq 1662 nt NT seq  +upstreamnt  +downstreamnt atggagttcgccgagttcgccgcgacggcggccgagatcgagggcgagagcgccgacatc gcgacgaccgagctggtgaccgggctgctcgcagacgccggtgacgacctctcgatcctc acacggctcgtgcagggacgggtgttcccggcctacgaggcgacgaagctcgacatcggc ccgaagctgtgttacgaggcgctggcgcgggcggcgggccgaaacgtcgccgtcgacgac atcgaggcccgcgtcgcggacgtgggcgagatcggtgccgtcgccgccgacctcgacctg ggcggccagcagggacttgctgccttcggcgctggctcgcagtccccgctgaccgtcgcc gaggtggcggacgaactcgcagccatcgcgtcggccagcggttcggggagccgcgacacg aaagtggagacgctgtttggcctgttcaaccgcgccagcgacgaggaggcgcgctatctc gcccggatcgtcctctcggagatgcggatcggcgtcggcgaggggacggtgcgcgacgcc atcgcggcggccttcgacgcgccggtcgacgccgtcgagcgcgcgctacaggtcaccaac gactacgggaacgtcgcccgggtcgcccgagacgagggggccgacgggctggccgacctc gaactgacgatcggccgaccgatcaaggcgatgctcgcacaggccggcaccgtgaccgag gccctcgaagactgggagaccgcagcggtcgagtggaagtacgacggcgctcgggtccag gtccactacgacggcgagacggtccggctgttctctcggaacatggaggaggtgaccgac ccgctgccggaggtcgtgtcggccgtcgaggacgccgtcgacggtccggtgattctcgac ggcgaggtcgtcgcggtcgacggcgacggcgatccgctccccttccaggaggtcctgcga cgcttccggcgcaaacacgacgtggcccgtgccagcgagaacgtcggcgttcgcctgcac gcgttcgactgcctccacgccgacggtcgcgacctgctggacgctccgctcgtcgaccga cgggacgcgctcgacgcggtgctgggcgacgccgacgccatccggtcgacgtgctggctc gcagacgacaccggacggatcgaggacatcgccgacgaggcgctggccgccggccacgag gggatcatgctgaaagatcccgactcgacgtactcgccgggcaagcgaggcaaacactgg cgcaagcgaaagcccgacgtggagacgctcgacctcgtcgtcaccggcgcagagtggggc gagggacggcgagcaacctacctggggaccttcgagctgtcggcccggaccgacgacggc tacgcgcccgtcggcaacgtcgcgaccgggatcaccgacgaacagctggcgacgctgacg gagctgctggagccacacgtcacccgggagatcggccagcgcgtcgagatcgaaccggcc gtcgtcttcgaggtcggctacgaggagatccagacctcctcgacctacgagtcggggtac gcgctccggttcccgcggttcgtcgaggtccgctcggacaaagccgtcgcggacggcgac acgctcgaacggatcgaacggctggccgcccagcaagggtga

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