Halomicrobium sp. LC1Hm: LC1Hm_2572
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Entry
LC1Hm_2572 CDS
T06261
Symbol
bat2
Name
(GenBank) PAS/PAC sensor protein
KO
K06930
HTH-type transcriptional regulator, bacterioopsin transcriptional activator and related proteins
Organism
hall
Halomicrobium sp. LC1Hm
Brite
KEGG Orthology (KO) [BR:
hall00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
hall03000
]
LC1Hm_2572 (bat2)
Transcription factors [BR:
hall03000
]
Prokaryotic type
Helix-turn-helix
Other families
LC1Hm_2572 (bat2)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
BAT
HTH_10
GAF_2
PAS_4
PAS_9
PAS
PAS_8
GAF
PAS_3
PAS_7
GAF_3
Sigma70_r4
HTH_24
HTH_20
HTH_5
LexA_DNA_bind
Sigma70_r4_2
DUF6366
Motif
Other DBs
NCBI-ProteinID:
QGA83606
UniProt:
A0A5Q0UPU5
LinkDB
All DBs
Position
complement(2399664..2402009)
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AA seq
781 aa
AA seq
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MTGESGPGSEASDGERVLYVDTPTDSVPDRLADRLADCRLRHETGVEAVTAAESESWDGL
VLTDGVAADRRSTLLDAVDCPSVLYASADPATIPAETTRRVETIVERETADAPSLLAEKI
ETLVGQFPDAFEDARASALSTICREVTEASALFVVGDDGRLCWSNHSFEALFPVDRIERS
IPETEDFYARLDAIVSGEPDDGGRREIGARDGPVENHSVVVPTPTGTRYYVHQRHRLASV
GDGITIEQFEDITDRVRRETRRRLLALLVEQARDGLYTLDHNGVVDFCNESFAAMLGYER
GDLIGMHASEILAPGELGAGQRTVQSLLDDPDAEGAEVDMTFRTRDGQHRELSIHYTLLS
TGGDTYGGLMGVARDVTERRERTRQIESQRDELSTLSRTNALVQDIIGSLGTAASTTELQ
QTVCDRLAESGRYGLAWIGERRGGDDVTVPLTSAGAWTEHLDEIELRDDGGTDGGPVTRA
YRTGEVQVVSDTRSLAALSPEGERALTAGFESVIVAPLRHGETTHGILAVYATEPDAFSQ
RIARSFAVLGETIGLALTAIQNKRLLQHEAPLRLAFRSDSDDACLAGIARGCDCTLETAG
VVETSDGVVQYLRVDGAAPGTVVDTVRESEIVEDAAVTRTDGDSLVELHGPSSPGTELAE
VGARLVETEIDPGGARLVVETTGDADLRSVQTVVERWFPDVTLVSKRKRTQPESDGERSP
LSPLTDRQREVLRAAYLSGYYDWPRETTAEELADSLGIASPTLHEHLRRAERNLLAGVLD
R
NT seq
2346 nt
NT seq
+upstream
nt +downstream
nt
atgaccggcgaaagcggccccggatcggaggcgagcgacggagagcgggtgctctacgtc
gacacgccgactgacagcgtccccgaccggctcgcagatcgcctcgccgactgtcgcctg
cgccacgagaccggcgtcgaggcggtcacggccgccgagtccgagtcgtgggacgggctc
gtcttgaccgacggtgtcgcggcggaccgacgcagcacgctcctcgatgcggtcgactgt
ccgtcggtgctgtacgcgagcgcggacccggcgacgatcccagcggagacgacacgccga
gtcgagacgatcgtcgaacgcgagaccgcggacgcgccgtctctcctcgcagagaagatc
gagacgctcgtcggacagttccccgacgccttcgaagacgcgcgtgcgagtgcgctctcg
acgatctgtcgggaggtgaccgaggccagcgcgctgttcgtcgtcggcgacgacggccgc
ctgtgctggtcgaaccacagcttcgaagcgctcttccccgtcgatcggatcgagcgctcg
atcccggagacggaggacttctacgcgcgactggacgcgatcgtctccggagagcccgac
gacggtggccgtcgcgaaatcggcgctcgcgatgggccggtcgaaaaccactcggtcgtc
gttcccacccccaccggcacccgctactacgtccaccagcgacaccgcctcgcgagtgtg
ggggacggcatcacgatcgagcagttcgaggatatcacggaccgcgtccgtcgcgagacg
cggcggcgactgctcgccttgctggtcgaacaggcgcgagacggcctgtacacgctcgac
cacaacggtgtcgtcgacttctgcaacgagtcgttcgcggcgatgctgggctacgaacgc
ggtgacctgatcgggatgcacgcttccgagatactcgctcccggcgaactgggggccggt
cagcgcaccgtccagtcgctgctggacgaccccgacgccgagggcgcggaagtcgacatg
accttccggacccgcgacggccagcaccgcgagctgtcgatccactacacgctcttgtcg
accggcggggacacctacggcggtctgatgggcgtcgcacgcgacgtgaccgaacgacgc
gagcggacccgccagatcgagtcccagcgagacgagctctcgacgctgagccggacgaac
gcactggtacaggacatcattggttcgctgggcaccgctgccagcaccacagaactccag
cagaccgtctgtgatcggctggccgagtcgggtcgctacggactggcgtggatcggcgag
cgccgcggtggcgacgacgtgaccgtcccgctgaccagcgccggtgcgtggaccgagcac
ctcgacgagatcgagcttcgcgacgacggtgggaccgatggtgggccggtcactcgtgcc
taccgcaccggcgaggtacaggtcgtctcggacacccgatcgctggcggcgctctcgccc
gagggagagcgagcactgactgccggcttcgagtcggtgatcgtcgccccgctccgtcac
ggcgagacgacccacggcatcctcgccgtgtacgcgaccgaaccggacgcgttcagccag
cgcatcgcacgcagcttcgccgtcctcggggagacgatcgggctcgctctcacggcgatc
cagaacaagcggctgctccagcacgaggccccgctcaggctggcgtttcgttccgacagc
gacgacgcctgtctggccgggatcgcacggggctgtgactgtacgctcgaaacggccggc
gtggtcgagaccagcgacggcgtggtgcagtaccttcgggtcgacggagccgcccccggt
acggtggtcgacacggtccgcgagtccgagatcgtcgaggacgcggcggtgacccggacc
gacggggactctctcgtcgaactccacggaccgtcgtcgccggggacggaactcgcagag
gtgggcgctcgtctcgtcgagaccgagatcgatcccggcggggctcgcctcgtcgtcgag
acgaccggcgacgcggacctccgatcggtccagaccgtcgtcgagcggtggttcccggac
gtgacgctcgtctccaagcgcaagcggactcagcccgagagcgacggcgagcggtcgccg
ctgtcgccgctgaccgatcgccagcgagaggtcctccgggcggcgtacctctcgggctac
tacgactggcctcgcgagacgaccgccgaggagctcgcggactcgctgggcatcgcctcg
ccgacactccacgagcacctccgccgggcagagcggaacctcctcgctggcgtgctcgac
cggtaa
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