Halomicrobium sp. LC1Hm: LC1Hm_2577
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Entry
LC1Hm_2577 CDS
T06261
Symbol
truD
Name
(GenBank) tRNA(Glu) U13 pseudouridine synthase TruD
KO
K06176
tRNA pseudouridine13 synthase [EC:
5.4.99.27
]
Organism
hall
Halomicrobium sp. LC1Hm
Brite
KEGG Orthology (KO) [BR:
hall00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
hall03016
]
LC1Hm_2577 (truD)
Enzymes [BR:
hall01000
]
5. Isomerases
5.4 Intramolecular transferases
5.4.99 Transferring other groups
5.4.99.27 tRNA pseudouridine13 synthase
LC1Hm_2577 (truD)
Transfer RNA biogenesis [BR:
hall03016
]
Eukaryotic type
tRNA modification factors
Psudouridine synthases
LC1Hm_2577 (truD)
Prokaryotic type
LC1Hm_2577 (truD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TruD
Motif
Other DBs
NCBI-ProteinID:
QGA83611
UniProt:
A0A5Q0UQ50
LinkDB
All DBs
Position
complement(2404552..2405898)
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AA seq
448 aa
AA seq
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MRPAQSIEQAVGMRYYVSDGDGIGGRLRASPEDFVVRELEAFEAEPADADSGAYAHLVVR
ATLHNWDTNDFASALSDRLGISRERVSWAGTKDKRAVTTQLFSIADADAADVPEIDGAEI
DVVGRAGRPVLFGDLAGNAFEITVRDVGRPEGVDAITEQLREFAGSADGDEPTVAVPNYF
GQQRFGSKRPITHEVGLAIVRNDWEGAVMAYLGNPNEREPEATQAARAYVQETHDWEGAL
ERFPRALGYERALCHSLADADNASPAAFRSALETLPTNLQTLFVNAAQSYLFNRILSERL
DRGLPFDRPVAGDVVCFADGDAPADLPLPDTDRTQRVTAERVDTVERHCERGRAFVTAPL
LGTETELAEGEPGEIERAVLADAGLEPTDFALPGEFDSSGTRRAVQVRSRIDVQRREEDA
IRFAFSLPKGSYATVLLREYLKRDPAQL
NT seq
1347 nt
NT seq
+upstream
nt +downstream
nt
atgcgcccagcccagtcgatcgagcaggccgtcggaatgcgctactacgtcagcgacggc
gacggcatcggtggccgactccgtgcctcgcccgaggacttcgtggtccgggaactggag
gcgttcgaggccgaacccgccgacgccgacagcggcgcgtacgcccacctcgtcgtgcgc
gcgacgctacataactgggacacgaacgacttcgcgtcggcgctgtccgatcgtctcggc
atctctcgggagcgcgtctcgtgggcggggacgaaggacaagcgtgcggtgacgacccag
ctgttctcgatcgcagacgcggacgcggccgacgtgcccgagatcgacggcgcggagatc
gacgtcgtcgggcgggcgggacgaccggtcctcttcggtgacctcgccggcaacgccttc
gagatcaccgtccgggacgtgggccgcccggaaggtgtcgacgcgatcaccgagcaactg
cgcgagttcgccggcagcgccgacggcgacgagccgacggtcgcggtgccaaactacttc
ggccagcaacgcttcggcagcaagcgcccgatcacccacgaggtcgggctggcgatcgtc
cggaacgactgggagggcgcggtgatggcctacctcgggaaccccaacgagcgcgagccc
gaggcgacacaggccgcgcgcgcgtacgtccaagagacccacgactgggagggggcactg
gagcggttcccgcgagcactggggtacgagcgggcgctctgtcacagtctggccgacgcc
gacaacgcctccccggcggcgttccggagcgcgctggagacgctgccgacgaacctccag
acgctcttcgtcaacgccgcccagtcatacctgttcaaccgcatcctctcggaacgcctc
gaccgcgggctcccgttcgaccgccccgtcgctggcgacgtggtctgtttcgccgacggc
gacgcgcccgccgacctcccgctgccggacaccgaccgcacacagcgggtcactgccgag
cgtgtcgacaccgtcgagcgacactgcgagcggggccgagcgttcgtcaccgcaccgctg
ctcgggaccgagacggagctagcagagggcgaaccgggcgagatcgaacgcgcggtgctc
gccgacgccggcctcgaaccgaccgacttcgcgcttccgggcgagttcgactcgtcggga
acccggcgcgcggtccaggtccggagccggatagacgtccagcgacgcgaggaggacgcg
atccgattcgcgttctcgctgccgaaaggcagctacgcgacggtgctgctccgtgagtac
ctgaagcgcgaccctgcccagttgtaa
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