Halomicrobium sp. LC1Hm: LC1Hm_3035
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Entry
LC1Hm_3035 CDS
T06261
Symbol
uvrD
Name
(GenBank) DNA helicase II / ATP-dependent DNA helicase PcrA
KO
K03657
ATP-dependent DNA helicase UvrD/PcrA [EC:
5.6.2.4
]
Organism
hall
Halomicrobium sp. LC1Hm
Pathway
hall03420
Nucleotide excision repair
hall03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
hall00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
LC1Hm_3035 (uvrD)
03430 Mismatch repair
LC1Hm_3035 (uvrD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
hall03400
]
LC1Hm_3035 (uvrD)
Enzymes [BR:
hall01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
LC1Hm_3035 (uvrD)
DNA repair and recombination proteins [BR:
hall03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
GGR (global genome repair) factors
LC1Hm_3035 (uvrD)
MMR (mismatch excision repair)
Other MMR factors
LC1Hm_3035 (uvrD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrD-helicase
AAA_19
UvrD_C
UvrD_C_2
AAA_30
DEAD
AAA_22
AAA_11
Herpes_ori_bp
Motif
Other DBs
NCBI-ProteinID:
QGA84061
UniProt:
A0A5Q0URG3
LinkDB
All DBs
Position
complement(2845309..2847129)
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AA seq
606 aa
AA seq
DB search
MVRLFGGPGSGKTTALLDRVEELLSEDDADVRDILVVSYTRAAAAEIRERLAERLDINPR
SLKGNVCTMHAKAYELLDLSRGDVVGESDKEAFCDDFGLEFEDEYEGSRRRSARSTTLGN
KVIATSQWLQRTRRDVADWYDVPFKWDEEEVRLPPEIDDNAQTGNKYTPTWPGDDDRLDV
PEAIRAWRTYKGDNDLTGFADMLERVKQRSLLPNVEYLIIDEFQDITTLQYDVYEEWKPR
MTKILIAGDDDQVVYAWQGADPDLLLEEDVDVDEILPNSYRLPSSILNVVNREVRHIEKR
QEKDLNPRKEGGEVLPMLNPSMLDLVREIRRTVDDDEGTVMILFRARYQMFQFMDEFIGE
GIPFTCLTDQRMWTDRLTEYVRGVEALDADEPLSVLEGRRLADMLADSAFGTGDRDDLFD
ELDEIADASEEDDLADIEIDPDVIREHAPFAPDPRAAADMLRKVTNFQERTVEAYFHGEY
AGMDADQVRLGTIHSAKGREADHVFVGTDLTEKVVEQMAAQVEQNDRHVPGDEEFTKHTD
PIPTLTDNERRVFYVGMSRARERLVLMENLVDGAPTLPIDVILENEPLPDSPEELLLEAQ
EPLPTP
NT seq
1821 nt
NT seq
+upstream
nt +downstream
nt
gtggtccggctgttcggcggtccggggagcgggaagacgacggcgctgctcgatcgcgtc
gaagaactgctgtccgaggacgacgccgacgttcgcgacattctggttgtctcgtacacg
cgtgcggccgccgccgagatccgcgagcgactggccgaacgactcgacatcaaccctcgc
tcgctgaagggcaacgtctgtacgatgcacgcgaaggcgtacgaactgctcgacctctct
cggggcgacgtggtcggcgagtccgacaaggaggcgttctgtgacgacttcgggctggag
ttcgaagacgagtacgaaggctctcgccgtcggtcggcccgctcgacgacgctcgggaac
aaggtcatcgccacgagccagtggctccagcgcactcgccgggacgtggccgactggtac
gacgtgcccttcaagtgggacgaggaggaggtccggctcccgcccgagatcgacgacaac
gcccagacgggcaacaagtacacgccgacctggcccggcgacgacgaccgactggacgtg
cccgaagcgatccgcgcctggcgcacctacaagggcgacaacgacctcaccggcttcgca
gacatgctcgaacgggtcaagcagcgatcgctgctgcccaacgtcgagtacctcatcatc
gacgagttccaggacatcaccaccctacagtacgacgtgtacgaggagtggaaaccccga
atgacgaagatcctcatcgcgggcgacgacgaccaggtcgtctacgcctggcagggggcc
gaccccgatctgttgctggaggaagacgtcgacgtcgacgagatcctgcccaactcctac
cgactgccgtcctcgattctcaacgtggtcaaccgcgaggtgcgccacatcgagaagcgc
caggagaaagacctcaatccgcgcaaggagggcggcgaggtgttgccgatgttgaacccc
tcgatgctcgatctggtccgcgagatccgccggaccgtcgacgacgacgaggggaccgtg
atgatcctctttcgggcgcggtaccagatgttccagttcatggacgagttcatcggcgag
gggatccccttcacctgcctgaccgaccagcggatgtggaccgaccgactcaccgagtac
gtccgcggtgtcgaggcgctcgacgccgacgaacccctctccgtgctggagggtcgccgg
ctcgcggacatgctcgccgactccgctttcgggaccggcgaccgcgacgacctgttcgac
gaactcgatgagatcgcagacgccagcgaggaggacgacctggcggacatcgagatcgat
ccggatgtgatccgcgaacacgcaccgttcgcaccggacccgcgggccgccgccgacatg
ctccggaaagtgaccaacttccaggaacggaccgtcgaggcgtacttccacggggagtac
gccggcatggacgccgaccaggtccgtctcgggacgatccactccgccaagggtcgcgag
gccgaccacgtgttcgtcggcaccgacctcaccgagaaggtcgtcgagcagatggccgca
caggtcgagcaaaacgaccgccacgtgccgggtgacgaggagttcaccaaacacaccgac
ccgatcccgaccctgactgacaacgaacggcgcgtgttttacgtcggcatgagccgtgcc
cgcgagcgactcgtcctgatggagaacctcgtcgacggcgcaccgacactccccatcgac
gtgatcctggagaacgaacccctgccagactcgcccgaagaactcctcctcgaagcccag
gaaccgctgccgacgccctga
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