Halomicrobium sp. LC1Hm: LC1Hm_3175
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Entry
LC1Hm_3175 CDS
T06261
Symbol
endA
Name
(GenBank) tRNA splicing endonuclease
KO
K01170
tRNA-intron endonuclease, archaea type [EC:
4.6.1.16
]
Organism
hall
Halomicrobium sp. LC1Hm
Brite
KEGG Orthology (KO) [BR:
hall00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
hall03016
]
LC1Hm_3175 (endA)
Enzymes [BR:
hall01000
]
4. Lyases
4.6 Phosphorus-oxygen lyases
4.6.1 Phosphorus-oxygen lyases (only sub-subclass identified to date)
4.6.1.16 tRNA-intron lyase
LC1Hm_3175 (endA)
Transfer RNA biogenesis [BR:
hall03016
]
Prokaryotic type
tRNA spricing factors
tRNA splicing endonucleases
LC1Hm_3175 (endA)
BRITE hierarchy
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
tRNA_int_endo
tRNA_int_endo_N
Motif
Other DBs
NCBI-ProteinID:
QGA84193
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Position
complement(2957729..2958739)
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AA seq
336 aa
AA seq
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MDATLSDGVVRAGKRAREQFYDSSGYGRPVDAGKLELAPVEAAHLLYRGDLDGVDGMGLR
ELLNSALLSEVDFFVYKDLRDRGFYCSPARPDRVEDPDGCDFVVYPRGKGPWDDAVAHRI
RVVSERETVPAADLGGCALAVVDEESEISYFETHRPDVTGTSRAAVPETDGDLLADRVVC
WDPPAELYEAAFYGQPLDEQDAQAIQLSLVEAASLAGAGTLQVEGDADAVIERGRAVEGD
RFDRRLAVYERLREQGIAPKTGFKFGADFRTYADVESVADLGHSELLVRAFDAGHVFEPR
DLALDVRLAHGVRKTMAYAFVGDEGIEWLAVERLTP
NT seq
1011 nt
NT seq
+upstream
nt +downstream
nt
atggacgcgacgctctccgatggagtcgtccgggccggcaagcgggcccgcgagcagttc
tacgattccagcgggtacggtcggccggtcgacgccgggaagctcgaactggcacccgtc
gaggcggcacacctgctgtatcgcggtgacctcgacggtgtcgacgggatgggacttcga
gagctactgaactccgcgttgctgtcggaggtcgacttcttcgtctacaaggacctgcgt
gaccggggattctactgctcgccggcacggcccgaccgcgtcgaggaccccgacggctgt
gacttcgtcgtctacccgcggggcaaggggccgtgggacgacgcggtcgcccaccggatt
cgggtcgtcagcgagcgcgagacggtcccggcagccgatctgggggggtgtgcgctggcc
gtcgtcgacgaggagagcgagatcagctacttcgagacccaccgcccggacgtcaccggg
acgagtcgggcggccgtccccgaaaccgacggcgatctgctcgcagaccgggtcgtctgc
tgggacccgcccgccgaactctacgaagcggccttctacgggcaaccgctcgacgagcag
gacgcacaggcgatccagctctcgctggtcgaggccgcgtccctcgccggggcgggcacg
cttcaggtcgagggcgatgccgacgcggtgatcgaacgcggtcgcgccgtcgagggcgat
cggttcgaccgccggctcgcggtgtacgaacggcttcgcgagcaggggatcgcacccaag
acgggcttcaagttcggcgcggacttccggacctacgcagatgtcgagagcgtcgcggac
ctgggccactccgaactgctcgtgcgggcgttcgacgccggccacgtcttcgagccccga
gacctcgcactggacgtgcgcctggcccacggcgtgcgcaagacgatggcctacgcgttc
gtcggcgacgaggggatcgagtggctggccgtcgagcgcctgacgccctga
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