Halomicrobium sp. LC1Hm: LC1Hm_3176
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Entry
LC1Hm_3176 CDS
T06261
Symbol
topA2
Name
(GenBank) DNA topoisomerase I
KO
K03168
DNA topoisomerase I [EC:
5.6.2.1
]
Organism
hall
Halomicrobium sp. LC1Hm
Brite
KEGG Orthology (KO) [BR:
hall00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
hall03032
]
LC1Hm_3176 (topA2)
03400 DNA repair and recombination proteins [BR:
hall03400
]
LC1Hm_3176 (topA2)
Enzymes [BR:
hall01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.1 DNA topoisomerase
LC1Hm_3176 (topA2)
DNA replication proteins [BR:
hall03032
]
Prokaryotic type
DNA Topoisomerases
LC1Hm_3176 (topA2)
DNA repair and recombination proteins [BR:
hall03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHIIR (short-homology-independent illegitimate recombination)
Facilitator
LC1Hm_3176 (topA2)
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Zn_ribbon_Top1
NucS_N
HypA
Beta_helix_3
Motif
Other DBs
NCBI-ProteinID:
QGA84194
UniProt:
A0A5Q0URG1
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Position
complement(2958797..2959546)
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AA seq
249 aa
AA seq
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MLAGDCTTLFETTGAQTQRTREQRGEVLVVVKPDNTVLVHDADGYQPVAWLTRPDSVTIE
GGTVVARDGDDLLRVVTHEEHGSASYPVSEAGIPVGDCLACAGTLVRSNGAVRCSDCAER
YGLPADATITGGRCRDCRLPTIRTERGRAFELCLDRECESLDDRVTEAFDREWACPECDG
DLRIVRKGGLFAGCEHHPDCETAFAIPTGVVVDTCPCGLPLFETSGGRRCLDATCSQAQV
SEPASYSGP
NT seq
750 nt
NT seq
+upstream
nt +downstream
nt
gtgctggccggcgactgtaccacgctgttcgagacgaccggcgcacagacccagcggact
cgcgagcaacgcggcgaggtcctcgtagtggtcaagcccgacaacaccgttctcgtccac
gacgccgacggctaccagccggtcgcgtggctcacgcggcccgacagcgtcactatcgag
ggcggcaccgtggtcgcccgcgacggcgacgacctcctgcgcgtggtcacccacgaggaa
cacggcagcgccagctacccggtctcggaggccggcatccccgtcggcgactgcctggcg
tgtgcgggcacgctggtccggtcgaacggcgcggtccggtgctcggactgtgcggagcgc
tacggcctccccgcggacgcgacgattaccggcggtcgctgccgggactgtcgcctcccc
accatccgcaccgaacggggccgagcgttcgaactgtgtctggaccgggagtgtgaatcg
ctggacgaccgcgtcaccgaggccttcgaccgcgagtgggcctgtccggaatgtgacggg
gacctccgcatcgtccggaagggcgggctgttcgccggctgtgagcaccaccctgactgc
gagaccgctttcgccatccccaccggcgtggtcgtcgacacctgtccatgcgggctcccg
ctgttcgagacctcggggggccgtcggtgtctcgacgcgacgtgttcgcaggcgcaggtg
agcgagccggcgtcgtactccggaccctga
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integrated database retrieval system
