Haloprofundus sp. MHR1: FCF25_05275
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Entry
FCF25_05275 CDS
T05952
Name
(GenBank) ribonuclease J
KO
K12574
ribonuclease J [EC:3.1.-.-]
Organism
halm
Haloprofundus sp. MHR1
Pathway
halm03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
halm00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
FCF25_05275
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
halm03019
]
FCF25_05275
Messenger RNA biogenesis [BR:
halm03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
FCF25_05275
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_J_b_CASP
Lactamase_B_2
Lactamase_B
RMMBL
Motif
Other DBs
NCBI-ProteinID:
QCJ46562
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All DBs
Position
complement(1042016..1043368)
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AA seq
450 aa
AA seq
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MEIEIATIGGYEEVGRQMTAVRAGNDVVVFDMGLNLSQVLIHDNVETEKMHSLDLIDMGA
IPDDRVMSDLEGDVQAIVPTHGHLDHIGAISKLAHRYDAPVVASPFTIELVKQQVQGENK
FNVNNDLVKMSAGETMSIGDSGQVELEFVNVTHSIIDAINPVIHTPEGAIVYGLDKRMDH
TPVIGDPIDMKRFREIGREGNGVLAYIEDCTNAGRKGRTPSESVARRHLKDVMTSVEDYD
GGIVATTFSSHIARVTSLVEFAKDIGRQPVLLGRSMEKYSGTAERLNFVDFPDDLGMYGH
RKSVDRTFKRIMKEGKENFLPIVTGHQGEPRAMLTRMGRGETPYELEDGDKVIFSARVIP
EPTNEGQRYQSEKLLKMQGARIYDDIHVSGHLREEGHYTMLDALQPQHVIPAHQNLKGFA
PYVSLCESQGYTLGRDVHVTSNGNMIQLVQ
NT seq
1353 nt
NT seq
+upstream
nt +downstream
nt
atggaaatcgaaatcgcaaccatcggcggctacgaagaagtcggtcggcagatgactgcc
gtccgcgccggtaacgacgtcgtcgtcttcgacatgggtctgaacctctcgcaggttctc
atccacgacaacgtcgagaccgagaagatgcacagcctggacctcatcgacatgggggcc
atcccggacgaccgcgtgatgagcgacctcgaaggagacgtgcaggccatcgtgccgacg
cacggccacctcgaccacatcggcgccatctcgaaactggcccaccgctacgacgcgccc
gtcgtcgccagcccgttcaccatcgaactggtgaaacagcaggtccaaggcgagaacaag
ttcaacgtcaacaacgacctcgtgaagatgagcgccggcgagacgatgtccatcggggac
tccggccaggtcgaactcgagttcgtcaacgtcacccactccatcatcgacgccatcaac
ccggtcatccacacgccggagggcgccatcgtctacggtctcgacaagcggatggaccac
acgccggtcatcggcgaccccatcgacatgaagcgcttccgcgaaatcggccgcgagggc
aacggcgtcctcgcgtacatcgaggactgcacgaacgcgggtcggaagggccgcacgccc
tccgagtccgtcgctcgtcgccacctcaaagacgtgatgacctccgtcgaggactacgac
ggcggcatcgtcgccacgacgttctccagccacatcgctcgcgtcacgagcctcgtcgag
ttcgccaaggacatcggccgccagccggttctcctcggccgctcgatggagaagtactcc
ggcaccgcggagcgcctgaacttcgtcgacttcccggacgacctcgggatgtacggtcac
cgcaagtcggtcgaccgcacgttcaagcgcatcatgaaggagggcaaggagaacttcctg
cccatcgtcacgggccatcagggcgaaccgcgcgcgatgctcacccggatgggccgcggc
gagacgccgtacgaactcgaagacggcgacaaggtcatcttctcggcccgcgtcatcccg
gagccgaccaacgagggtcagcgctaccagtccgagaagctcctgaagatgcagggcgcg
cgcatctacgacgacatccacgtctcgggccacctccgcgaggagggccactacacgatg
ctcgacgcgttgcagccccagcacgtcattccggcccaccagaacctcaaagggttcgcg
ccgtacgtcagcctctgtgagtcgcagggctacacgctcggccgggacgtgcacgtgacg
agcaacgggaacatgattcagctggtccagtga
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