KEGG   Haloprofundus sp. MHR1: FCF25_05275
Entry
FCF25_05275       CDS       T05952                                 
Name
(GenBank) ribonuclease J
  KO
K12574  ribonuclease J [EC:3.1.-.-]
Organism
halm  Haloprofundus sp. MHR1
Pathway
halm03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:halm00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    FCF25_05275
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:halm03019]
    FCF25_05275
Messenger RNA biogenesis [BR:halm03019]
 Prokaryotic type
  Bacterial mRNA degradation factors
   RNA degradosome components
    Ribonucreases
     FCF25_05275
SSDB
Motif
Pfam: RNase_J_b_CASP Lactamase_B_2 Lactamase_B RMMBL
Other DBs
NCBI-ProteinID: QCJ46562
LinkDB
Position
complement(1042016..1043368)
AA seq 450 aa
MEIEIATIGGYEEVGRQMTAVRAGNDVVVFDMGLNLSQVLIHDNVETEKMHSLDLIDMGA
IPDDRVMSDLEGDVQAIVPTHGHLDHIGAISKLAHRYDAPVVASPFTIELVKQQVQGENK
FNVNNDLVKMSAGETMSIGDSGQVELEFVNVTHSIIDAINPVIHTPEGAIVYGLDKRMDH
TPVIGDPIDMKRFREIGREGNGVLAYIEDCTNAGRKGRTPSESVARRHLKDVMTSVEDYD
GGIVATTFSSHIARVTSLVEFAKDIGRQPVLLGRSMEKYSGTAERLNFVDFPDDLGMYGH
RKSVDRTFKRIMKEGKENFLPIVTGHQGEPRAMLTRMGRGETPYELEDGDKVIFSARVIP
EPTNEGQRYQSEKLLKMQGARIYDDIHVSGHLREEGHYTMLDALQPQHVIPAHQNLKGFA
PYVSLCESQGYTLGRDVHVTSNGNMIQLVQ
NT seq 1353 nt   +upstreamnt  +downstreamnt
atggaaatcgaaatcgcaaccatcggcggctacgaagaagtcggtcggcagatgactgcc
gtccgcgccggtaacgacgtcgtcgtcttcgacatgggtctgaacctctcgcaggttctc
atccacgacaacgtcgagaccgagaagatgcacagcctggacctcatcgacatgggggcc
atcccggacgaccgcgtgatgagcgacctcgaaggagacgtgcaggccatcgtgccgacg
cacggccacctcgaccacatcggcgccatctcgaaactggcccaccgctacgacgcgccc
gtcgtcgccagcccgttcaccatcgaactggtgaaacagcaggtccaaggcgagaacaag
ttcaacgtcaacaacgacctcgtgaagatgagcgccggcgagacgatgtccatcggggac
tccggccaggtcgaactcgagttcgtcaacgtcacccactccatcatcgacgccatcaac
ccggtcatccacacgccggagggcgccatcgtctacggtctcgacaagcggatggaccac
acgccggtcatcggcgaccccatcgacatgaagcgcttccgcgaaatcggccgcgagggc
aacggcgtcctcgcgtacatcgaggactgcacgaacgcgggtcggaagggccgcacgccc
tccgagtccgtcgctcgtcgccacctcaaagacgtgatgacctccgtcgaggactacgac
ggcggcatcgtcgccacgacgttctccagccacatcgctcgcgtcacgagcctcgtcgag
ttcgccaaggacatcggccgccagccggttctcctcggccgctcgatggagaagtactcc
ggcaccgcggagcgcctgaacttcgtcgacttcccggacgacctcgggatgtacggtcac
cgcaagtcggtcgaccgcacgttcaagcgcatcatgaaggagggcaaggagaacttcctg
cccatcgtcacgggccatcagggcgaaccgcgcgcgatgctcacccggatgggccgcggc
gagacgccgtacgaactcgaagacggcgacaaggtcatcttctcggcccgcgtcatcccg
gagccgaccaacgagggtcagcgctaccagtccgagaagctcctgaagatgcagggcgcg
cgcatctacgacgacatccacgtctcgggccacctccgcgaggagggccactacacgatg
ctcgacgcgttgcagccccagcacgtcattccggcccaccagaacctcaaagggttcgcg
ccgtacgtcagcctctgtgagtcgcagggctacacgctcggccgggacgtgcacgtgacg
agcaacgggaacatgattcagctggtccagtga

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