Haloprofundus sp. MHR1: FCF25_06905
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Entry
FCF25_06905 CDS
T05952
Name
(GenBank) ATP-dependent DNA helicase
KO
K10844
DNA excision repair protein ERCC-2 [EC:
5.6.2.3
]
Organism
halm
Haloprofundus sp. MHR1
Pathway
halm03022
Basal transcription factors
halm03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
halm00001
]
09120 Genetic Information Processing
09121 Transcription
03022 Basal transcription factors
FCF25_06905
09124 Replication and repair
03420 Nucleotide excision repair
FCF25_06905
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
halm03021
]
FCF25_06905
03036 Chromosome and associated proteins [BR:
halm03036
]
FCF25_06905
03400 DNA repair and recombination proteins [BR:
halm03400
]
FCF25_06905
Enzymes [BR:
halm01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.3 DNA 5'-3' helicase
FCF25_06905
Transcription machinery [BR:
halm03021
]
Eukaryotic type
RNA polymerase II system
Basal transcription factors
TFIIH
FCF25_06905
Chromosome and associated proteins [BR:
halm03036
]
Eukaryotic type
Centrosome formation proteins
Spindle formation proteins
FCF25_06905
DNA repair and recombination proteins [BR:
halm03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TFIIH complex
FCF25_06905
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Helicase_C_2
DEAD_2
DEAD
ResIII
ATPase
SLFN-g3_helicase
AAA_22
HBB
AAA_16
nSTAND3
Zot
GvpD_P-loop
AAA_30
AAA_19
PhoH
AAA_34
Motif
Other DBs
NCBI-ProteinID:
QCJ48513
LinkDB
All DBs
Position
complement(1384778..1386946)
Genome browser
AA seq
722 aa
AA seq
DB search
MRFFPYEEPYPNQRAAMDGIANAFAREQDVLIEGAPGTGKTLSALVPALEFARENDKTVV
ITTNVHQQMRQFVEDARAITRTEPIRAVVFRGKASMCHIDVGYEECQSLRDTTRSVAEKE
EDKQQLERRQEQLLERSRDGDSGAAEARSAVMDELDQLDDELEDLRETNVCEHYYNNLVR
DNTEFFSWLFEDVRTPDDVYEYADEHHLCGYELLKEGMEGVDLVVCNYHHLLDPMIREQF
FRWLDRDPGDVITVFDEAHNIEGAARDHASRTLTENTIESALHELEEADDSRSEPAANVL
EAFLGALRRTYDESFGFGEREQVGENWSDVGIANPDRRDDLTLEFLQSYEGRGIDAEVEL
ALQLGKSLDEQYEQAYKDGETTSRKECQTLQAAAFLSSWMEDGTKLGQHPMVSVRRDSGT
EEIYGRAELYTCIPRQVTESLFEEVHASVLMSATLRPFDVTEDVLGIENAVTLAYGMEYP
EENRRTFAVQTPALFAKERNDESTQETIASVLSDAIRFTPGNTLVFFPSYAEAQRYYEML
GGSGLGGASLGSLMLDEAGTRTEDLRQRFVSSENATLFTSLWGTLAEGVSFDGDDARTVL
VVGVPYPHLSERMEAVQDAYDRAYADRGRDPGWRYAVEIPTIRKTRQALGRVIRSPEDFG
VRALVDKRYTSASDTMGKYGVRDTFPPEERRELIDVGPEKLKFAMLNFYAGHDAYDGEPP
SP
NT seq
2169 nt
NT seq
+upstream
nt +downstream
nt
atgcggttcttcccgtacgaggagccctaccccaaccagcgggcggcgatggacggcatc
gccaacgcgttcgcgcgcgagcaggacgtgctcatcgagggcgcacccggtacgggcaag
acgctctcggcgctcgtccccgcgctggagttcgcccgcgagaacgacaagacggtcgtc
atcacgacgaacgtccaccagcagatgcgccagttcgtcgaggacgcccgcgccatcacg
cgcaccgagccgattcgggccgtggtgttccgcgggaaggcgtcgatgtgccacatcgac
gtggggtacgaggagtgtcagagcctccgcgacacgacgcgctccgtggccgagaaggaa
gaggacaaacaacagctcgaacgccgccaggagcaactgctcgaacggagccgcgacggc
gactcgggtgccgcggaagcccgcagcgccgtcatggacgaactcgaccagctagacgac
gaactggaggacctccgcgagacgaacgtctgcgagcactactacaacaacctcgtccga
gacaacacggagttcttctcgtggctgttcgaggacgtgcgcacgcccgacgacgtctac
gagtacgccgacgagcaccacctctgcgggtacgaactcctcaaggaggggatggagggc
gtcgacctcgtcgtctgcaactaccaccacctgctcgacccgatgatccgcgagcagttc
ttccggtggctggaccgcgaccccggcgacgtcatcaccgtcttcgacgaggcgcacaac
atcgagggcgcggcccgcgaccacgccagccgaacgctcaccgagaacaccatcgagagc
gcgctccacgaactggaggaggccgacgactcccgaagcgaaccggccgcaaacgtgctc
gaagcgttcctcggcgcgctccgtcgaacgtacgacgagagcttcgggttcggcgaacgc
gaacaggtcggcgagaactggtccgacgtcggcatcgccaatccggaccgccgcgacgac
ctgacgctcgaatttctgcagagctacgagggccgcggcatcgacgcggaggtggagctg
gcgctccaactcggaaagtcgctcgacgagcagtacgaacaggcgtacaaggacggcgag
acgaccagtcggaaggagtgccagacgctacaggcggcggcgtttctctcgtcgtggatg
gaggacggcaccaaactcggccaacatccgatggtctcggtccgacgtgacagcggcacc
gaggagatatacggccgcgccgaactgtacacctgcatcccgcggcaggtgaccgagtcg
ctgttcgaggaggtccacgcgagcgtcctcatgagcgcgacgctccgccccttcgacgtg
accgaggacgttctcggcatcgagaacgcggtcaccctcgcctacgggatggagtacccc
gaggagaaccggcggacgttcgcggtgcagacgcccgcgctgttcgccaaggagcgaaac
gacgagtcgacgcaggagaccatcgcgagcgtgctctcggacgcaattcggttcactccc
ggaaacacgctcgtcttcttcccctcctacgcggaggcgcaacgctactacgagatgctg
ggcgggagcggcctcggcggcgcgtccctgggttcgctcatgctcgacgaggcgggtacg
cgcaccgaggacctccgccagcggttcgtgtcgagcgagaacgcgacactcttcacctcg
ctgtgggggacgctcgccgagggcgtgagcttcgacggcgacgacgcccggaccgtcctc
gtcgtcggcgtcccctacccgcacctctcggagcggatggaggcggtacaggacgcctac
gaccgggcgtacgccgaccgaggccgggaccccgggtggcgctacgccgtcgagattccg
acgattcgaaagacccggcaggcgctcggacgggttatccgctcgcccgaggacttcggg
gttcgcgcgctcgtcgacaagcgctacacctcggcgagcgacacgatgggcaagtacggc
gtccgcgacacgttcccgccggaggagcggcgggaactcatcgacgtcggccccgagaag
ctgaagttcgccatgctcaacttctacgccggccacgacgcgtacgacggcgagccgccc
agtccctaa
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integrated database retrieval system
