Haloprofundus sp. MHR1: FCF25_07875
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Entry
FCF25_07875 CDS
T05952
Name
(GenBank) transcription initiation factor IIB family protein
KO
K03124
transcription initiation factor TFIIB
Organism
halm
Haloprofundus sp. MHR1
Pathway
halm03022
Basal transcription factors
Brite
KEGG Orthology (KO) [BR:
halm00001
]
09120 Genetic Information Processing
09121 Transcription
03022 Basal transcription factors
FCF25_07875
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
halm03021
]
FCF25_07875
Transcription machinery [BR:
halm03021
]
Eukaryotic type
RNA polymerase II system
Basal transcription factors
TFIIB
FCF25_07875
Prokaryotic type
Archaeal type
TFB
FCF25_07875
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TFIIB
Zn_Ribbon_TF
DZR_2
RB_B
DUF8122
Auto_anti-p27
DZR
UNC45-central
Motif
Other DBs
NCBI-ProteinID:
QCJ47036
LinkDB
All DBs
Position
1567842..1568705
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AA seq
287 aa
AA seq
DB search
MSKTQATGCPECDGRLRKDSSETVCANCGLVVAADHIDHGPEWRSFADDETNPERTGAPL
TRSRHDRGLTTEIGRSTRVKGRKRRRLTRMRRQHNRARISSKRERNQVYAFTEIRRVTGA
LSLPDRVRDHACSLFRSAQNENLLRGRSLEGFSSACVYAACRVAGVSRTVDEVLDVARAT
ENEHGAAYDALNRDLGLPVGPISPAEYVPRFASELDLDSAVERRARELAAESHDSGLAAG
RNPGGVAAACLYTAARKFDARVTQQEAADVAGVTPVTLRSTYYDLRD
NT seq
864 nt
NT seq
+upstream
nt +downstream
nt
atgagcaagacacaagcgaccggttgccccgaatgcgacggccgactgcggaaggatagc
agcgagaccgtgtgcgcgaactgcggcctcgtcgtcgccgccgaccacatcgaccacggc
cccgagtggcggtcgttcgccgacgacgagacgaaccccgagcggaccggcgcgccgctg
acgcgttcgcgacacgaccgcggcctcactaccgaaatcggccggtcgacccgagtcaaa
ggccgtaagcgtcgccgtctgacgcggatgcgtcgacagcacaaccgcgcgcgcatctcc
tcgaagcgcgagcgcaatcaggtgtacgcgttcaccgaaatccggcgagtgaccggcgcg
ctgtcgctaccggaccgcgtccgcgaccacgcctgttcgctgtttcgctcggcccagaac
gagaacctgcttcgcggacgctcgctggaggggttctcctcggcgtgcgtctacgccgcc
tgccgcgtcgccggcgtctcgcggaccgtcgacgaagtgctcgacgtcgcccgcgcgacg
gagaacgaacacggcgcggcgtacgacgccctcaaccgcgacctcgggcttccggtcggc
cccatctcgcccgcggagtacgtcccccggttcgcgagcgagctcgacctcgactcggcg
gtggagcgccgcgcccgcgaactcgccgccgagagccacgacagcggtctcgcggcgggt
cgaaatcccggcggcgtcgccgccgcctgtctctacacggccgcccggaaattcgacgcg
cgggtgacacaacaggaggcggccgacgtcgcgggcgtcacgcccgtcacgctccggagc
acctactacgacctgcgcgactga
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