Haloprofundus sp. MHR1: FCF25_08795
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Entry
FCF25_08795 CDS
T05952
Name
(GenBank) RNB domain-containing ribonuclease
KO
K12573
ribonuclease R [EC:
3.1.13.1
]
Organism
halm
Haloprofundus sp. MHR1
Pathway
halm03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
halm00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
FCF25_08795
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
halm03019
]
FCF25_08795
03016 Transfer RNA biogenesis [BR:
halm03016
]
FCF25_08795
Enzymes [BR:
halm01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.1 exoribonuclease II
FCF25_08795
Messenger RNA biogenesis [BR:
halm03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
FCF25_08795
Transfer RNA biogenesis [BR:
halm03016
]
Prokaryotic type
tRNA degradation factors
FCF25_08795
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNB
Motif
Other DBs
NCBI-ProteinID:
QCJ47209
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All DBs
Position
1741365..1742729
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AA seq
454 aa
AA seq
DB search
MSNDAQAQAGTAEGQGPVEIDPELDRHLRNKREELFEEFEIRDEFPPEVRREAKERTEDV
QAEIRDAVDDRRDLREMTTWTTDPADAQDFDDAISIEEDDEAYTLWVHIADVSHYVHPGS
EMWAEAVKRGNTVYLPAYTVHMLPPILAETVCSLVPNEERLAHTVEMRLDKENLGYESID
IYKSVIESDERLTYSQCEKRLDDPDAPLHDEIALSYELADRMHEQRKEDGSLVLNPSRDH
AHTIIEECMLKANKAVTHELMWGRGVEAMYRVHPQPTPDQWDKALREIAELDSVKIPGGS
WDDPRKAVNAALEEAPPRMLNKIQRAVLKVMPRAKYMNDPFGGHHALNFDIYGHFTSPIR
RLSDLINHWIVHENDVPEDLVELCDRASDKQKDAETAERLYKQFMQEVGLDPYAVNSRGL
VVVDEDEDESDGETDGETDELDAEQFDAEQSDAE
NT seq
1365 nt
NT seq
+upstream
nt +downstream
nt
atgtcgaacgacgcacaagcgcaggctggcaccgccgagggccagggtcccgtcgagatc
gaccccgaactcgaccgccacctgcggaacaaacgcgaggaactgttcgaggagttcgag
atccgcgacgagttcccgccggaggtccgccgcgaagcgaaggagcgaaccgaagacgtc
caagccgagattcgggacgccgtcgacgaccgccgcgacctccgcgagatgacgacctgg
acgaccgaccccgccgacgcccaggacttcgacgacgccatcagcatcgaggaggacgac
gaggcgtacacgctgtgggtccacatcgccgacgtgagccactacgtccaccccggctcc
gagatgtgggccgaggcggtcaaacgcggcaacaccgtctacctccccgcctacaccgtc
cacatgcttcctccgattctcgcggagactgtctgttctctggtccccaacgaggaacgg
ctcgcgcacaccgtcgagatgcgcctcgacaaggagaacctcggctacgagtccatcgac
atctacaaatcggtcatcgagagcgacgagcgactcacctacagtcagtgcgagaagcgc
ctcgacgaccccgacgcgccgctgcacgacgagattgcgctctcctacgaactcgcagac
cggatgcacgagcagcgaaaggaggacggttcgctcgtgctcaacccgagtcgcgaccac
gcgcacaccatcatcgaggagtgcatgctgaaggcgaacaaagccgtcacgcacgaactg
atgtggggccgcggcgtcgaggcgatgtaccgcgtccacccgcaaccgacgcccgaccag
tgggacaaggcgctgcgcgaaatcgccgaactcgacagcgtgaagattcccggcggctcg
tgggacgacccccggaaagccgtcaacgcggcgctcgaagaggccccgccgcggatgctc
aacaagattcagcgcgccgtgctgaaggtgatgccccgggcgaagtacatgaacgacccc
ttcggcggtcaccacgcgctgaacttcgacatctacggccacttcacctcgcccatccgc
cgcctctcggacctcatcaaccactggatcgtccacgagaacgacgttcccgaggacctc
gtcgagctctgcgaccgcgcctccgacaagcagaaagacgccgagacggccgagcgactc
tacaaacagttcatgcaagaggtgggcctcgacccgtacgccgtgaacagccgcggcctc
gtcgtcgtcgacgaggacgaagacgagagtgatggagagaccgacggcgagaccgacgag
ttagacgccgagcagttcgacgcggagcagtccgacgcggagtag
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