Haloprofundus sp. MHR1: FCF25_10905
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Entry
FCF25_10905 CDS
T05952
Name
(GenBank) transcription elongation factor Spt5
KO
K15172
transcription elongation factor SPT5
Organism
halm
Haloprofundus sp. MHR1
Pathway
halm03250
Viral life cycle - HIV-1
Brite
KEGG Orthology (KO) [BR:
halm00001
]
09120 Genetic Information Processing
09125 Information processing in viruses
03250 Viral life cycle - HIV-1
FCF25_10905
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
halm03021
]
FCF25_10905
03019 Messenger RNA biogenesis [BR:
halm03019
]
FCF25_10905
Transcription machinery [BR:
halm03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription elongation factors
FCF25_10905
RNA polymerase I system
FCF25_10905
Messenger RNA biogenesis [BR:
halm03019
]
Eukaryotic type
mRNA processing factors
3' end processing
DRB sensitivity inducing factor (DSIF) complex
FCF25_10905
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Spt5-NGN
KOW
Ribosomal_uL24m-like
KOW4_SPT5
SH3_KIN17_C
DUF6093
KOW2_Spt5
Motif
Other DBs
NCBI-ProteinID:
QCJ47595
LinkDB
All DBs
Position
complement(2160632..2161069)
Genome browser
AA seq
145 aa
AA seq
DB search
MGIFAVKTTARQERTVADMLATKEEPEIHAVIAPDSLTSYVMVEADNTAVLERLMDEIPH
ARSIVPGNSSLAEVEHFLSPTPDVEGIAEGDIVELIAGPFKGEKARVQRIDEAKDQVTVE
LYEATVPIPVTVRGDQIRVLDSEER
NT seq
438 nt
NT seq
+upstream
nt +downstream
nt
atgggcatcttcgccgtgaagacgacggcgagacaggagcgcaccgtcgccgacatgctc
gccacgaaggaagagcccgagattcacgccgtcatcgcgccggactcgctgacgagttac
gtgatggtcgaagccgacaacacggccgtactcgaacgcctcatggacgagattccgcac
gcccggagcatcgtccccggcaactccagcctcgcggaagtcgaacacttcctctcgccg
acgcccgacgtcgagggcatcgccgagggcgacatcgtcgaactcatcgccgggccattc
aagggcgagaaggcccgcgtccagcgcatcgacgaggccaaagaccaggtgaccgtcgaa
ctgtacgaggcgacggtcccgattccggtgacggtccgcggcgaccagattcgcgtgctc
gactccgaagaacggtag
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