Haloprofundus sp. MHR1: FCF25_12040
Help
Entry
FCF25_12040 CDS
T05952
Name
(GenBank) transcription initiation factor IIB
KO
K03124
transcription initiation factor TFIIB
Organism
halm
Haloprofundus sp. MHR1
Pathway
halm03022
Basal transcription factors
Brite
KEGG Orthology (KO) [BR:
halm00001
]
09120 Genetic Information Processing
09121 Transcription
03022 Basal transcription factors
FCF25_12040
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
halm03021
]
FCF25_12040
Transcription machinery [BR:
halm03021
]
Eukaryotic type
RNA polymerase II system
Basal transcription factors
TFIIB
FCF25_12040
Prokaryotic type
Archaeal type
TFB
FCF25_12040
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TFIIB
Zn_Ribbon_TF
Trm112p
Sigma70_r4
Zn_ribbon_tTFIIB
Anti-TRAP
Zn_ribbon_3
Zn_ribbon_LysW
HTH_Tnp_ISL3
DZR
DUF8106
Zn_ribbon_Nudix
A2L_zn_ribbon
Zn_ribbon_PaaD
Motif
Other DBs
NCBI-ProteinID:
QCJ47803
LinkDB
All DBs
Position
2377365..2378345
Genome browser
AA seq
326 aa
AA seq
DB search
MTDSVRRYTGERTRQRDEEENEDEADETLRCPECGGQLASDTEHGETVCTDCGLVVEEDG
IDRGPEWRAFDSKEKDQKSRVGAPTTNMMHDKGLSTNIGWQNKDAYGNSLSSRQREKMQR
LRTWNERFRTRDSKERNLKQALGEIDRMASALGLPENVRETASVIYRRALGEDLLPGRSI
EGVSTASLYAAARQAGTPRSLDEISGVSRVEKDEIARTYRYVVRELKLEIQPADPESYVP
RFASALDLSDEAERRARKLLKNAKEQGVHSGKSPVGLAAAAVYAASLLTNEKVTQSEVSD
VANISEVTIRNRYHELLEAEEQVHLP
NT seq
981 nt
NT seq
+upstream
nt +downstream
nt
atgactgatagtgtccgacggtacacgggcgagcgcacccgacagagagacgaggaagag
aacgaagacgaagccgacgagacgctgcgctgcccggagtgcggcggacagttggccagc
gacaccgaacacggcgagaccgtctgtaccgactgcggtctcgtcgtcgaggaggacggc
atcgaccgcggccccgagtggcgcgcgttcgactccaaggagaaagaccagaagtcccgc
gtcggcgcaccgacgacgaacatgatgcacgacaaggggctgtcgacgaacatcggctgg
cagaacaaggacgcctacggtaactcgctgtcgagccgccagcgggagaagatgcagcgg
ctacggacgtggaacgagcgcttccgcacccgcgactcgaaagagcgcaacctcaaacag
gcgctcggcgagatcgaccgcatggcctcggcgctcggcctccccgagaacgtacgcgag
accgcctcggtcatctaccgccgcgcgctcggcgaggacctgctccccggccgctccatc
gagggcgtctcgacggccagtctgtacgccgccgctcgtcaggccggaacgccgcgcagt
ctcgacgagatttcgggcgtctcccgcgtcgagaaggacgaaatcgcccggacgtaccgc
tacgtcgtccgcgagctgaaactcgaaatccagcccgcagaccccgagagctacgtcccg
cggttcgcctcggcgctcgacctctccgacgaggccgaacgccgcgcacgaaaactgctg
aagaacgccaaagaacagggcgtccactcgggtaagtcgccggtcggcctcgccgccgcc
gccgtctacgccgcctcgctgttgaccaacgagaaggtgactcagagcgaagtgagcgac
gtcgccaacatcagcgaagtcaccatccggaaccggtaccacgaactgctcgaagccgaa
gagcaggtccacctgccgtag
DBGET
integrated database retrieval system
