KEGG   Haloprofundus sp. MHR1: FCF25_15390
Entry
FCF25_15390       CDS       T05952                                 
Name
(GenBank) transcription initiation factor IIB
  KO
K03124  transcription initiation factor TFIIB
Organism
halm  Haloprofundus sp. MHR1
Pathway
halm03022  Basal transcription factors
Brite
KEGG Orthology (KO) [BR:halm00001]
 09120 Genetic Information Processing
  09121 Transcription
   03022 Basal transcription factors
    FCF25_15390
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:halm03021]
    FCF25_15390
Transcription machinery [BR:halm03021]
 Eukaryotic type
  RNA polymerase II system
   Basal transcription factors
    TFIIB
     FCF25_15390
 Prokaryotic type
  Archaeal type
    TFB
     FCF25_15390
SSDB
Motif
Pfam: TFIIB Zn_Ribbon_TF Anti-TRAP Zn_ribbon_RRN7 Cyclin_C Trm112p Cas12f1-like_TNB Zn_ribbon_LysW Auto_anti-p27 Zn_ribbon_tTFIIB A2L_zn_ribbon HTH_Tnp_ISL3 Sigma70_r4 DZR Zn_ribbon_Nudix HTH_24 Zn_ribbon_3 DUF7129 Zn_ribbon_TFIIB Zn_ribbon_Top1
Other DBs
NCBI-ProteinID: QCJ48427
LinkDB
Position
3039194..3040162
AA seq 322 aa
MTDTTIRTYTGETEPERERESESVRTCPECGGRLVSDTEHGETVCTDCGLVVEEDSVDRG
PEWRAFDSAERDSKSRVGAPTTKMMHDKGLSTNIGWQNKDAYGNSLSSRQRQQMQRLRTW
NERFRTRDSKERNLKQALGEIDRMASALGLPENVRETASVIYRRALGEDLLPGRSIEGVA
TASLYAAARQAGMPRSLDEIATVSRVEKMELTRTYRYIVRELKLEIQPADPEQYVPRFAS
ALDLSDEAERRARQLLKTAKEKGIHSGKSPVGLAAAAVYAAALLTNEKVTQSEVSDVANI
SEVTIRNRYKELLEAEDAGLFA
NT seq 969 nt   +upstreamnt  +downstreamnt
atgaccgacacaaccatccgtacgtacaccggcgaaacggaaccagaacgagaacgagag
agcgagtcggtgcgcacctgtcccgagtgtggcggccgactcgtcagcgacaccgaacac
ggtgagaccgtctgtaccgattgcggcctcgtcgtcgaggaagactccgtcgaccgcggc
cccgaatggcgtgccttcgacagcgcggagcgcgactcgaagtcccgcgtcggcgcaccg
acgacgaagatgatgcacgacaaggggctgtcgacgaacatcggctggcagaacaaggac
gcctacggcaactcgttgtcgtcgcgtcagcgccagcagatgcagcgactgcgaacgtgg
aacgagcgcttccgcacccgcgactcgaaagagcgcaacctcaaacaggcgctcggcgag
atcgaccgcatggcctcggcgctcggcctccccgagaacgtacgcgagaccgcctcggtc
atctaccgccgtgcgctcggcgaggacctgctccccggccgctccatcgagggcgtcgcc
acggccagtctgtacgccgccgctcgtcaggcggggatgccccgcagtctcgacgagatc
gcgaccgtctcccgcgtcgagaagatggagctcacccggacgtaccgctacatcgtccgc
gaactgaagctcgaaatccagcccgccgaccccgagcagtacgtcccgcggttcgcctcg
gcgctcgacctctccgacgaggccgaacgccgcgcccggcagctactgaagacggccaag
gagaagggaatccactcgggcaagtcgccggtcggcctcgccgccgccgccgtctacgcc
gcggcgctgctgaccaacgagaaggtgacccagagcgaggtgagcgacgtcgccaacatc
agcgaagtcaccatccgaaaccggtacaaggagctgctggaagcggaagacgccggcctc
ttcgcctaa

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