Halolamina sp. CBA1230: B4589_005295 Help Entry B4589_005295      CDS       T06651                                  Name (GenBank) CDC48 family AAA ATPase   KO K13525   transitional endoplasmic reticulum ATPase Organism haln  Halolamina sp. CBA1230 Pathway haln04141   Protein processing in endoplasmic reticulum Brite KEGG Orthology (KO) [BR:haln00001]  09120 Genetic Information Processing   09123 Folding, sorting and degradation    04141 Protein processing in endoplasmic reticulum     B4589_005295  09180 Brite Hierarchies   09182 Protein families: genetic information processing    03019 Messenger RNA biogenesis [BR:haln03019]     B4589_005295    03009 Ribosome biogenesis [BR:haln03009]     B4589_005295    04131 Membrane trafficking [BR:haln04131]     B4589_005295   09183 Protein families: signaling and cellular processes    04147 Exosome [BR:haln04147]     B4589_005295 Messenger RNA biogenesis [BR:haln03019]  Eukaryotic type   mRNA surveillance and transport factors    Transport factors     Ran-mediated transport factors      B4589_005295 Ribosome biogenesis [BR:haln03009]  Eukaryotic type   Pre-60S particles    Ribosome quality control proteins     B4589_005295 Membrane trafficking [BR:haln04131]  SNARE   SNARE associated proteins    Others     B4589_005295  Autophagy   Aggrephagy    Other aggrephagy associated proteins     B4589_005295 Exosome [BR:haln04147]  Exosomal proteins   Exosomal proteins of haemopoietic cells  (B-cell, T-cell, DC-cell, reticulocyte, and mast cell)    B4589_005295 BRITE hierarchy SSDB OrthologParalogGene clusterGFIT Motif Pfam:  AAA AAA_lid_3 CDC48_N AAA_16 RuvB_N CDC48_2 AAA_5 TIP49 AAA_22 AAA_33 AAA_2 AAA_14 nSTAND3 NPHP3_N IstB_IS21 RNA_helicase AAA_28 AAA_7 Mg_chelatase ABC_tran AAA_18 ATPase Sigma54_activat NB-ARC AAA_3 AAA_17 AAA_24 DUF815 Parvo_NS1 TsaE AAA_11 AAA_30 Zeta_toxin SLFN-g3_helicase NACHT AAA_lid_PRS2_C PhoH KAP_NTPase IPT Vps4_C Motif Other DBs NCBI-ProteinID:  QKY19823 UniProt:  A0A7D5BXX8 LinkDB All DBs Position complement(1043612..1045831) Genome browser AA seq 739 aa AA seqDB search MNEVQLEVAKAYPNDSGRGIARLDPDTLLHLKLSPGDIIEIEGAETTAAKVWRADRQDWN TDTVRIDGFTRQNADVSIGERVTIRKAEAETAESLTLAPPEEASVQFGSEAAGMVKRQIL KRPVVERDIVPVMSSTNHPFMRSPGQAIPLIAVDTEPDGVCLITEETDVELREEPISGYD KTGGGITYEDIGGLEDEIQRVREMVELPMKHPQIFKKLGIEPPQGVLLHGPPGTGKTLLA KAVANETSASFFSIAGPEIISKYYGESEQQLREIFEDAKEESPAIVFIDELDSIAPKRED VTGEVERRVVAQLLTMMDGLDSRGQVIVIGATNRVDSVDPALRRPGRFDREIEIGVPDET GRKEILQIHSRGMPLSDDIDLDHLAAETHGFVGADIESLSKEAAMKALRRYLPEIDLDEE EVPPSLIDRMIVKREDFRGALNEVEPSAMREVLVELPKISWDDVGGLTDPKQQVKEAVEW PLSSPEKFERMGVEAPKGVLLYGPPGTGKTLMAKAVANETNANFISVRGPQLLSKWVGES EKAIRQTFRKARQVSPTVIFFDELDSLAPSRGEQAGTNVSERVVNQLLTELDGLEEMGEV MVIGATNRPDMIDPALIRSGRFDRLVMVGSPDQDGREQILQIHTGDTPLAPDVSLKEVAE ITDGYVGSDLESICREAAIEALRESDDADEVEMRHFRQAIEAVRPTITDDLMSYYEDVEE EFRGSSSANVDRGNRLGFQ NT seq 2220 nt NT seq  +upstreamnt  +downstreamnt atgaacgaagttcaactagaagtcgcgaaagcgtacccgaacgattcgggccgcggcatc gctcggctcgaccccgacaccctgctgcatctcaagctctcccccggcgacatcatcgag atcgagggcgccgaaacgacggctgcgaaggtctggcgtgccgaccgtcaggactggaac accgacaccgtccgaatcgacgggttcactcggcagaacgccgacgtgagcatcggcgag cgcgtcacgatccgcaaggccgaggccgagaccgccgagtcgctcacgctcgcgccgccg gaggaggcgtcggtgcagttcggctccgaggccgccggcatggtgaaacggcagatcctc aagcgcccggtggtcgagcgcgacatcgtccccgtgatgtcgagcacgaaccacccgttc atgcgctcgcccgggcaggcgatcccgctgatcgccgtcgacaccgagcccgacggcgtc tgcctgatcaccgaggagaccgacgtggagctccgcgaggagcccatctcggggtacgac aagaccggcggcgggatcacctacgaggacatcggcggcctcgaggacgagatccagcgc gtccgggagatggtcgaactgccgatgaaacacccccagatcttcaagaagctcggcatc gagccgccccagggggtgttgctccacggcccgcccggcacggggaagacgctgctcgcg aaggcggtcgccaacgagacctccgcgagtttcttctccatcgcgggcccggagatcatc tcgaagtactacggtgagtccgaacagcagctcagggagatcttcgaggacgccaaggag gagagccccgcgatcgtgttcatcgacgagctcgactccatcgcgccgaagcgtgaggac gtgaccggcgaggtcgagcgccgcgtcgtcgcccagctgctgacgatgatggacgggctc gactcccgcgggcaggtgatcgtcatcggcgcgaccaaccgcgtcgacagcgtcgacccc gcgctccgtcgcccgggccggttcgaccgcgagatcgagatcggcgtccccgacgagacc gggcgcaaagagatcctccagatccacagccgcgggatgccgctgtcggacgacatcgac ctcgaccacctcgccgccgagacccacgggttcgtcggcgccgacatcgagagcctcagc aaggaggccgcgatgaaggcgctgcggcgctacctccccgagatcgatctcgacgaggag gaggtgccacccagcctgatcgaccgcatgatcgtcaagcgggaggacttccgcggcgcg ctcaacgaggtcgagcccagcgcgatgcgggaggtgctggtcgagctccccaagatctcc tgggacgacgttggcggcctgaccgaccccaaacagcaggtgaaggaggccgtcgagtgg ccgctctcgagcccggagaagttcgaacgcatgggcgtcgaggcgccgaagggcgtactc ctgtacggcccgcccggcacggggaagacgctgatggcgaaggcggtggccaacgagacc aacgccaacttcatctcggtgcggggcccgcagctgctctcgaagtgggtcggcgagtcc gagaaggcgatccgccagacgttccgcaaggcgcgacaggtctcgcccaccgtgatcttc ttcgacgagctcgactcgctcgcgccgagtcggggtgagcaggcggggacgaacgtctcc gagcgcgtcgtgaaccagctcctcaccgagctcgacgggctcgaggagatgggcgaggtg atggtgatcggcgccaccaaccgcccggacatgatcgaccccgcgctgatccgctcgggg cggttcgaccggctcgtgatggtcggctcgcccgaccaggacggccgcgagcagatcctc cagatccacaccggggacacgccgctggcgccggacgtgagcctgaaggaggtcgccgag atcaccgacggctacgtcggctccgatctggagtcgatctgtcgggaggccgccatcgag gcgctgcgggagtccgacgacgccgacgaggtggagatgcgccacttccggcaggcgatc gaggcggtgcggccgacgatcaccgacgacctgatgagctactacgaggacgtcgaggag gagttccgcggcagctccagcgcgaacgtcgaccgcggcaaccgcctggggttccagtag

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