Halolamina sp. CBA1230: B4589_008080
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Entry
B4589_008080 CDS
T06651
Name
(GenBank) DNA topoisomerase I
KO
K03168
DNA topoisomerase I [EC:
5.6.2.1
]
Organism
haln
Halolamina sp. CBA1230
Brite
KEGG Orthology (KO) [BR:
haln00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
haln03032
]
B4589_008080
03400 DNA repair and recombination proteins [BR:
haln03400
]
B4589_008080
Enzymes [BR:
haln01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.1 DNA topoisomerase
B4589_008080
DNA replication proteins [BR:
haln03032
]
Prokaryotic type
DNA Topoisomerases
B4589_008080
DNA repair and recombination proteins [BR:
haln03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHIIR (short-homology-independent illegitimate recombination)
Facilitator
B4589_008080
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Topoisom_bac
Zn_ribbon_Top1
Toprim
LAGLIDADG_3
HHH_5
MarR_2
Intein_splicing
HHH
HTH_3
Cdd1
DUF4332
HVO_A0261_N
HTH_24
HTH_28
HTH_Tnp_1
HTH_19
DNA_pol_lambd_f
HTH_5
Sigma70_r4
HTH_31
HVO_2718
HHH_RS2-RL21-YNQ2
Toprim_4
PF0610-like_N
DUF742
HHH_2
HEXIM
Motif
Other DBs
NCBI-ProteinID:
QKY20338
LinkDB
All DBs
Position
1550413..1554531
Genome browser
AA seq
1372 aa
AA seq
DB search
MELIVTEKDNAARRIAEILSDGTADAERVNGVNVYGWGGKRVIGLSGHVVGVDFPPEYDD
WRDVEPHELIEAPIETEPTQEAIVAALRRLSRDADRVIIATDYDREGELIGKEAFDIVRG
VDESVPIERARFSSITENEVQEAFANPGDLDFDLAAAGEARQTVDLVWGAALTRFLSLSA
GQLGEDFISVGRVQGPTLKLLVDREREIQAFDPDDYWELFADLTKDGGSGFEAQYFYLDD
DGNEARRIWDESAAENAHEALSAASAAAVEEVNRRTRTDEPPAPFNTTQFIRAASSLGYS
AQRAMSIAEDLYTAGYITYPRTDNTVYPDDLDPEELLEAFSETFFGDSVEELLEQEAIEP
TEGDEETTDHPPIHPTGEMPTDLDDDEWEVYELVVRRFFATCAPSATWEHLRVVAGVESE
VSLPSGGERGLSLKANGKRLLEEGYHSVYPYSSADETVVPDVERDEELAVSDVHLDAKET
QPPRRYGQSRLIETMEEMGVGTKCLTEDTEVLVRSGNDIKRRKISAVFEDEQVVLADGDT
EIATTSGAPKTISVEEATDRAIEAEGTLVSKRELGPDEEVVRLRTANSSFSVTSDHPLYV
RNEGTQIVQAGEVEPGDKLLSIRPTTDQTESDSLDPVLTWETFAAESDRWTKLYGTDSND
ALAETRAKTGQTQRELADQLDIDRAEISAWENSYRDVPVWVLGRTGIRPDELHGLNEGVT
FENPFPIRWSPNLARVLANLFGDGSVHVDESENVVDVRYHNTDKQLIERFASDIEAIFGV
RPSVSDRPGRESHHQMKYQANVPSSVSRILHHLLETVEDSGCPAVPDEYVPSFVGALMDD
EGHVSRERKAFISNTNHELLAGVGEMLEDRGIETKLAESQHKLHIRGRENLERFFDQMPV
AIDEKYHRALDALRSYDVTRHKARILELTVEQPRSTSELAAELGLSEGRVGSIVSALRRE
NYLEKQISGSNRSHDGNRTIRYVASAFEGSIYGAVLGKTSGQTVLEVTEREYDGPVYDLT
VDDDAPNFAVGGGVVVHNSTRHNTIEKLYDRNYVEGDPPRPTQLAHAVVEAAEEFADHIV
SEEMTAQLEADMRAIAAGEKGFDEVTEESREMLDTVFDELQESREEVGDHLRKSMKADKI
LGPCPECGEDLLVRKSRYGSYFVGCDGYPDCEYTLPLPSTGKPLILDEECEKHGLSRVKM
LAGRKTFVHGCPLCKAEEADAEADRIIGACPECGEDEGGELAIKQLRSGSRLVGCTRYPD
CDYSLPLPRRGEIEVTEDTCEEHHLPHLEVHGDDDEPWELGCPICNYREFQAREANSELE
TVEGIGEKTAEKLAEAGVEDVEGLKEADPDDLAESVEGVSAGSVRDWQAKAD
NT seq
4119 nt
NT seq
+upstream
nt +downstream
nt
atggaactcatcgtcaccgagaaggacaacgcggcccgtcgcatcgcggagatcctcagc
gacggcaccgccgacgccgagcgggtcaacggcgtcaacgtctacggctgggggggcaaa
cgggtgatcggcctctcgggccacgtcgtcggcgtcgacttcccgccggagtacgacgac
tggcgggacgtcgaaccccacgaactcatcgaggcgccgatcgagaccgagcccacccag
gaggccatcgtcgccgccctccgccggctctcccgtgacgccgaccgcgtgatcatcgcg
accgactacgaccgcgagggcgaactcatcgggaaggaggcgttcgacatcgtgcgcggc
gtcgacgagtcggtccccatcgagcgcgcccgcttctcctccatcaccgagaacgaggtg
caggaggcgttcgcgaacccgggcgacctcgacttcgatctcgcggcggcgggggaagcc
cgccagactgtggatctggtgtggggcgccgcactcacgcggttcctctcgctctccgca
ggtcagctcggcgaggacttcatctccgtcggtcgcgtccaggggccgacgctgaagctg
ctggtcgaccgcgaacgcgagatccaggcgttcgaccccgacgactactgggagctgttc
gccgacctcaccaaggacggcggctcggggttcgaggcgcagtacttctacctcgacgac
gacggcaacgaagcccggcgcatctgggacgagtccgccgccgagaacgcccacgaggcg
ctttccgccgcgtcggcggccgccgtcgaggaggtgaaccgccggacgcgaaccgacgag
ccgccggcgccgttcaacaccacgcagttcatccgcgccgcgagttcgctcggctactcc
gcccaacgtgcgatgagcatcgccgaggacctctacaccgccggctacatcacctacccg
cggaccgacaacacggtctacccggacgatctcgaccccgaggagctgctcgaagcgttc
tcggagacgttcttcggcgacagcgtcgaggagctgttggagcaagaggcgatcgagccc
accgagggcgacgaggagacgaccgaccacccgccgatccacccgaccggcgagatgccg
accgatctcgacgacgacgagtgggaagtgtacgaactggtcgtgcggcgcttcttcgcg
acctgtgcgccgtcggcgacatgggagcacctgcgcgtcgtcgccggtgtggagagcgag
gtgagccttccgtcgggcggcgagcgcggcctctcgctgaaggccaacgggaagcgcctg
ctcgaggaggggtaccactcggtctacccctactcctcggccgacgagacggtcgtgccg
gacgtcgagcgcgacgaagagctggcggtcagcgacgtccacctcgacgccaaggaaacc
caaccgccgcggcgctacggccagtcgcggctgatcgagacgatggaggagatgggggtt
gggacgaaatgtctgactgaggatacagaggtgctcgttcggagcggaaacgacatcaag
cgccggaagatcagtgcggttttcgaggacgaacaggtcgtcctcgccgacggtgatacg
gaaatcgcaacgaccagtggtgcaccgaaaaccatctctgtcgaggaggcgacagaccga
gccatcgaagccgagggaacgcttgtcagcaagcgtgaactcggtccggacgaagaggtg
gtacgcctccgtacggcgaacagttcgttctcggtcacgtcggaccacccgctgtacgta
cggaacgaagggacacagatcgttcaagctggggaggtagaacccggtgacaaactactg
agcatccgtcccacgaccgaccagaccgaatcagacagcctcgatccggtactgacgtgg
gaaacgttcgcggcggagtccgaccgatggacgaagctctacgggaccgactccaacgac
gctctcgcggaaacgcgagcgaaaaccgggcaaacccagcgagaacttgcggaccaactc
gacatcgacagggcggagatcagtgcatgggagaacagctaccgggacgttccagtgtgg
gttctgggccgaaccgggattcgtcccgacgaactacacggactaaatgagggagtgacc
ttcgagaatcccttccctattcgctggtcccccaacctcgctcgggtgctcgcaaatctc
ttcggagacggttcggtccacgtcgacgaatccgaaaatgtcgtcgacgtgagataccac
aacaccgataagcaactcatcgagcggttcgcttcggacatcgaggcgatattcggtgta
cgtccgtcagtgagcgatcgaccggggcgtgagtctcatcaccagatgaagtatcaagcg
aacgttccctccagtgtcagccggattcttcatcacctgctcgaaaccgtcgaagactct
ggttgtcccgccgtgcctgacgagtacgtcccatcgttcgttggtgcactgatggacgac
gagggtcacgtttctcgggaacgaaaggcgttcatctcgaacacgaaccatgaactgctc
gccggagtcggagaaatgctcgaggaccggggtatcgagacgaaacttgcggaatcccag
cacaagctccacatccgaggtcgagagaacttagagcgcttcttcgaccagatgccggtg
gctatcgacgaaaagtaccatagagcgctcgatgcactccggagttatgacgtaacgcgg
cacaaagcacgaatactcgaactgaccgttgagcagccgaggtcgaccagcgaactggct
gccgaactcggtctttccgaaggtcgggtcgggagtattgtcagcgcacttcgcagagag
aactacctcgagaaacaaatcagtggaagcaaccggagccacgacggaaacagaacgatt
cggtatgttgcgagcgcgttcgaggggtcgatatacggtgcggttctcggaaaaacgagc
gggcagaccgttctagaggtgacggaacgggagtacgacggccctgtttacgacctcaca
gtcgacgacgacgccccgaatttcgccgttgggggtggagtagtcgtccacaactccacc
cgccacaacaccatcgagaagctgtacgaccgcaactatgtcgagggcgacccgccccga
cccacacagctcgctcacgcggtcgtcgaggccgccgaggagttcgccgaccacatcgtc
agcgaggagatgaccgcacagctggaggcggacatgcgcgccatcgcggccggcgagaaa
gggttcgacgaagtgaccgaggagtcccgcgagatgctggacaccgtgttcgacgaactg
caggagtcccgcgaggaggtcggcgaccacctgcggaagtcgatgaaggccgacaaaatc
ctggggccgtgtccggagtgtggcgaggacctgctcgtccggaaatcccgctacggcagc
tacttcgtcggttgtgacggctaccccgactgcgagtacacgctgccgctcccctccacg
ggcaagccgctgatcctcgacgaggagtgtgagaaacacgggctcagccgcgtgaagatg
ctcgccgggcggaagacgttcgtccacggctgtccgctctgcaaggccgaggaggccgac
gccgaggcggaccggatcatcggcgcctgtcccgaatgtggagaggatgaggggggagag
ctggcgatcaagcagctccgttcaggctcccgactggtcggctgtacgcgctacccggac
tgtgactactcgctgccgctgccccgccgcggcgagatcgaggtgacggaggacacctgc
gaggagcaccacctcccccatctggaggtccacggcgacgacgacgagccgtgggagctg
ggctgcccgatctgtaactaccgggagttccaggcccgcgaggcgaactcggagctggag
accgtcgaggggatcggcgagaagaccgccgagaagctggcggaagcgggcgtcgaggac
gtcgaggggctgaaggaagcggacccggacgacctggccgagagcgtcgagggcgtgagt
gcggggtcggtgcgtgactggcaagcgaaagccgactga
DBGET
integrated database retrieval system
