Halolamina sp. CBA1230: B4589_010290
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Entry
B4589_010290 CDS
T06651
Symbol
endA
Name
(GenBank) tRNA-intron lyase
KO
K01170
tRNA-intron endonuclease, archaea type [EC:
4.6.1.16
]
Organism
haln
Halolamina sp. CBA1230
Brite
KEGG Orthology (KO) [BR:
haln00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
haln03016
]
B4589_010290 (endA)
Enzymes [BR:
haln01000
]
4. Lyases
4.6 Phosphorus-oxygen lyases
4.6.1 Phosphorus-oxygen lyases (only sub-subclass identified to date)
4.6.1.16 tRNA-intron lyase
B4589_010290 (endA)
Transfer RNA biogenesis [BR:
haln03016
]
Prokaryotic type
tRNA spricing factors
tRNA splicing endonucleases
B4589_010290 (endA)
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Gene cluster
GFIT
Motif
Pfam:
tRNA_int_endo
tRNA_int_endo_N
Motif
Other DBs
NCBI-ProteinID:
QKY20749
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Position
1947592..1948626
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AA seq
344 aa
AA seq
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MDGTLRDGVVRLSGDARQRFYDSGGYGRPAGGSDLDLAPVEAAHLLYRGDVDAVTSEDGE
RLGFREFLTRTDAVLAFVVYKDLRDRGFYLSPARDGWVDEGVDDETDFVVYPRGKGPSDD
EIAYRLRVVGERAPLSAASIDEHVLAVVDEDGELTYFGTEWLSPSGTADPQLPDSLDATL
MDDRLLVWEPPESLYEGGFFGQRLAGRNADSGPLQLSLLEAAYLAERDCLPVDLATVQGH
AEAIEGERFRRRYAAYESLREAGVVPKSGFKFGADFRVYESFDGVSDLGHSDKLVRVVEP
SHEFLPRELSLDVRLAGGVRKRMVFALTEPTGEIDWLCVERITP
NT seq
1035 nt
NT seq
+upstream
nt +downstream
nt
atggacgggacgcttcgcgacggcgtggtccggctctcgggcgacgcaagacagcggttc
tacgactccggggggtacggccgcccggccggcgggagcgacctggatctcgcgccggtc
gaggccgcccacctgctctatcgcggcgacgtcgacgcggtcacgagtgaggacggcgaa
cgactggggtttcgtgagttcctgactcggaccgacgccgtgctcgcgttcgtcgtgtac
aaggacctccgcgatcgcggcttctacctttcgccggcccgcgacggctgggtcgacgag
ggcgtcgacgacgagacggacttcgtggtctacccgcgcgggaaggggccgagcgacgac
gagatcgcctaccggctccgggtcgtgggcgagcgcgcgccgctgtcggcggcgagcatc
gacgaacacgtgctcgcggtcgtcgacgaggacggcgaactcacctacttcggcacggag
tggctctcgccgtcgggtactgccgacccgcagctgcccgactccctcgacgcgacgctg
atggacgaccgattgctggtgtgggaaccgccggaatcgctgtacgagggcggcttcttc
ggccagcggctggccggccgcaacgcggactcggggccgctccagctctcgctgctggag
gccgcctacctcgccgagcgggactgcctccccgtggatctcgcgaccgtgcagggccac
gcagaagcgatcgagggcgagcggttccgccggcgctacgcggcgtacgagtcgctgcgg
gaggcgggcgtggtgcccaaatccggattcaagttcggcgcggacttccgggtgtacgag
tcgttcgacggcgtgtcggatctgggccactcggacaagctggtccgggtggtcgagccg
agccacgagttcctcccccgggagctgtcgctggacgtgcggctcgcgggcggggttcgc
aagcgaatggtttttgcgctgaccgagccgacaggagagatagattggctctgcgtcgag
cgaatcacgccgtga
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