Halolamina sp. CBA1230: B4589_015620
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Entry
B4589_015620 CDS
T06651
Name
(GenBank) PD-(D/E)XK nuclease family protein
KO
K16899
ATP-dependent helicase/nuclease subunit B [EC:
5.6.2.4
3.1.-.-]
Organism
haln
Halolamina sp. CBA1230
Brite
KEGG Orthology (KO) [BR:
haln00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
haln03400
]
B4589_015620
Enzymes [BR:
haln01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
B4589_015620
DNA repair and recombination proteins [BR:
haln03400
]
Prokaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
AddAB pathway proteins
B4589_015620
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
PDDEXK_1
Motif
Other DBs
NCBI-ProteinID:
QKY21848
UniProt:
A0A7D5CLT0
LinkDB
All DBs
Position
pCBA1230-01:84658..87852
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AA seq
1064 aa
AA seq
DB search
MTNRTVLVGPNHHALEAAAFDRGRSLANEGINRVLYVSEESTRHDRVETHWREAGDSLRL
RTATLMGLVFDCYEQLEGPTTRLPEETDRRALEFSLDDILSDHSWLSTQPHVSASLVDAF
NRRFARFQNVGLTTPERLAAEFSDSSLSDRIRETTLAAYRAYDRYRDRFSDAWHVTDEEV
FGTVTDQDLTELLPHVDVVIVDGFIDPTELERQMLEALATSFSTIAILPTFSQSGTAGVD
AATTAVRELYTELGFEEERIHEPEDRSPLQQVATTLYRAEPPETQTVPEALEWRELPTPE
REIRYVARDIRTILASGIDPSQIGVVIPGLQAYDEYVEDTFHTYDLAYSVDSDAALMDTH
VGSAVENLLTLAEAAPRADAVTELVTNPVVDLLDDGGEDAVLTAHRRSDAIRVESMLQYL
PSAVTSTLQSLLETLTPLREADTRVADGCEILQTAVADLHISAALDADESRVNTAREQAA
FDQVDELLSSFDAADPEHPDLAPSAALNRALRGATLQGYSSSSNDIAVLDHIDAANHAFD
HLYIVGLTGEHFPKITRHPAFFERMVEAHPILDVLDTRIRDRYLFATVLANAEAVTLTTP
STDPESTAVVRSPILDELNRTTGIEPTIGTDSRIGSREDLQRAIAPLDNRQEAVNAAGER
GDFTASQTIRADRGIACATERASPDLSPRDGLLDPETVADLYPRETREPYSASRVERYVN
CGFQFYMENILELEDPADIDRTPDPLEAGTLIHDTLERFFAELQSEPGEPVDISEIDQSE
LEAHMLSVARSELAAASFEYDGLFYRRWLEQLFAGLGDPAENPYDSDPRPHEGTDKGLFV
RFIEHERQRDGGTYPAWFEVPFGDELHDGAADPFAIDLPNGDSVEFHGYIDRIDVGVDDD
APTVQLFDYKTGSTPSMTTTTGGTTFQLPLYLLAAEQVVDSELTDMTDLAATYYKTKPPN
DIYQPRGIESKFDSSAELHRFLTDVIPQRLQTLTTSIEQGRFQTTLLTANEANCEYCDYR
RSCDVRHHQRRERVAQLEDDSETYVPIRATSTDFASVFSGETDD
NT seq
3195 nt
NT seq
+upstream
nt +downstream
nt
atgactaaccggacggtcctcgtcggtcccaatcaccacgcgcttgaggcggctgcattt
gatcgcgggcggtcgctcgctaacgaggggatcaatcgtgtgctctacgtgtcggaagaa
tccacccggcacgaccgggtcgaaacccattggcgtgaggctggcgactcactcagactc
cggactgcaaccctaatggggctcgtattcgactgttatgaacagttggaggggccaacg
acgcgccttcctgaagagactgatcgccgagcgctggaattcagtcttgacgacatcctc
tcagaccactcttggttatccacccaaccacatgtctcggcgtcattggtcgatgcgttt
aatcgccgattcgcacggtttcagaacgtcggcctaacgacccctgagcgtcttgctgcg
gagttctccgactcctccctctcagatcggatccgtgaaacaacccttgctgcctataga
gcgtacgaccgataccgtgaccggttctctgacgcatggcacgttaccgacgaggaagtg
tttggaacggtcactgaccaggatctcaccgagctgctcccacatgtcgacgtcgtcatc
gtcgatggattcatcgatccaaccgagctcgaacggcaaatgctcgaagcgctggcaaca
tcgttctcgacgatcgcaatcctgccaaccttttcgcagtcaggcactgccggagtcgac
gcggcgaccacggcggttcgagagttgtataccgagctggggttcgaagaagaacgaatc
cacgagcctgaagatcgctcgccgctccagcaggttgccacgacactctatcgggcagaa
ccgcccgagactcagacagttccggaggcactcgagtggcgtgaactcccgacaccagaa
cgtgaaatccgatatgtcgctcgggacatccggactatcctcgcatcggggatcgatccc
tcacagatcggtgtcgtcatcccggggctccaagcctacgacgaatatgtcgaagacacc
ttccacacctatgacctggcctactcggttgattcggacgcggcactgatggacacccac
gttggaagcgcagtcgagaacctcctcacactcgccgaggcagcgccacgggctgatgca
gtgactgaactcgtgacgaaccctgttgtggatctccttgatgatgggggcgaagatgct
gtcctcacggctcatcggcggagtgatgcgatccgggttgagtcgatgctgcaatatctc
cccagtgcagtcacctcgacgcttcagtcgctactcgagacactcacaccgcttcgtgag
gcagatacccgggtggcagacggctgtgagatactccaaacggccgttgccgatcttcat
atctcggcggcactggacgccgatgaatcacgagtcaatactgctcgcgaacaggcagca
tttgaccaggtcgacgagctcctctcctcgtttgatgccgctgatccggagcatccggat
ctcgcaccatccgccgcactcaaccgtgccctccggggggcaacactccagggctactca
agcagttcgaacgatattgccgtccttgaccatatcgatgcagcgaatcatgcgttcgat
catctctacatcgttggactcacaggggaacacttcccgaagatcacccggcatccagcg
tttttcgaacgcatggttgaggcgcacccgatcctcgacgtgctcgacactcggatccgc
gaccgatatctcttcgcgacggtgctcgcgaacgccgaggcagtaaccctcaccacgcca
tcaacggaccccgaatcgacggctgtggtccgctcgccgatccttgatgaactcaatcgg
acgacgggtattgagccaacaattgggaccgacagccgaatcggctcacgtgaggatctc
caacgggcgatcgcccctctcgacaaccgacaggaagccgtcaatgccgccggtgagcgg
ggagatttcacggcgagtcaaacgatccgggccgatcggggcatcgcatgtgcaaccgaa
cgtgcaagtcccgatctctcccccagggatggacttctcgaccccgagacggtcgccgat
ctgtacccacgggaaactcgggaaccgtatagcgcgagccgcgtcgaacgctacgtcaac
tgtgggttccagttctatatggagaacattctggagctcgaggatccggcggatatcgat
cgaacgccggatccgcttgaggcagggaccttgatccacgacaccctcgaacggttcttt
gccgagcttcaatcggaaccgggtgagcctgtcgacatcagtgagatcgaccagtcggag
ctggaagcccacatgctttcagtcgcccgttcggagctggcggcggcatcatttgagtac
gacgggctgttctatcgtcggtggctggaacagctcttcgctggtctcggggatcctgcg
gagaatccctacgacagtgatccacgcccacacgagggaacagacaagggactgttcgtc
cggtttatcgaacacgaacgacagcgggatggtgggacatacccggcctggttcgaggtc
ccattcggggacgagctgcatgacggtgctgccgacccgttcgcgattgacctaccgaac
ggggacagtgtcgagttccatggctacatcgatcggatcgacgttggcgtcgatgacgat
gcaccaacggtccaactgttcgactacaaaacaggcagcaccccatcgatgacaacaacg
accggtggcacgaccttccaactcccactgtatctgcttgccgcagagcaggtggtagac
agcgagctgacggacatgacggatcttgctgcgacctactacaagacgaagcctcccaac
gacatctaccaaccgaggggtatcgagtcgaagtttgactcctccgccgagctccaccga
ttcctcacagatgtgatcccccagcgcctccaaacactcacgacatctatcgagcaagga
cgcttccaaacgacattactcacggcaaacgaagccaattgtgagtattgtgattaccga
cgatcgtgtgacgtcagacatcaccagcgccgggaacgggtagcccaactcgaggatgat
tcggagacgtacgtcccgatccgggcgacatcgaccgactttgcgtcggtattctcgggt
gagaccgatgactga
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