Halomonas sp. 1513: BWR19_04390
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Entry
BWR19_04390 CDS
T04761
Name
(GenBank) RNA helicase
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
halo
Halomonas sp. 1513
Pathway
halo03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
halo00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
BWR19_04390
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
halo03019
]
BWR19_04390
03009 Ribosome biogenesis [BR:
halo03009
]
BWR19_04390
Enzymes [BR:
halo01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
BWR19_04390
Messenger RNA biogenesis [BR:
halo03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
BWR19_04390
Ribosome biogenesis [BR:
halo03009
]
Prokaryotic type
rRNA helicases
BWR19_04390
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DbpA
ResIII
CMS1
AAA_30
Motif
Other DBs
NCBI-ProteinID:
APX92237
LinkDB
All DBs
Position
954136..955836
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AA seq
566 aa
AA seq
DB search
MTSTSVASPSFGDLALLPAVLSAVETLGYETPSPIQLQTIPALLEGRDMLGQAQTGTGKT
AAFALPILSRIDLDRREPQVLVMAPTRELAQQVAVSFSKYGQNLKGLEVATLCGGQEYRE
QLGALKRGAQVVVGTPGRIIDHLDRGSLKLDGLSALVLDEADEMLRMGFIDDVKRVVADT
PKDAQRVFFSATLPTEIERIVNRYLVDPVKVAIEASAGTAASIDQRMVRVDGGAKLEALA
RILEVEPVDGAIVFVRTRAACTTLVEQLTARGVNAAGLSGDLDQSLRERTITRLKRGKVD
VLIATDVAARGLDVPRITHVINYDLPQDSEAYTHRIGRTGRAGRTGIAITFVGFRETRKV
RWMEQATGQHMAEMPLPDEATIRAHRDEVFSKRVQGMITAGADEQKALIERLVAEGNDPI
ELACVFAAMARADEAPIGRVQAPRAERASDRAPRDGKPKRRDSAPREGMTRYRVSVGHKD
GVKPGQLVGALANEGGIEGARIGRIDIRNAFSVVELPSSLPSSILAKMARARVAGRPLEI
SEDSGAPERAPRRRSDGDAPIRRTSA
NT seq
1701 nt
NT seq
+upstream
nt +downstream
nt
atgacctcgacttctgtcgcttcgccgagcttcggcgatcttgctctgttgcctgccgtt
ctctccgctgtggaaacactgggctacgagactccttcgccgatccagctgcagaccatc
cctgcgctgctggaaggccgtgacatgctgggccaggcccagaccggtaccggcaagacc
gcagccttcgcgctgccgatcctgtcgcgtatcgacctcgaccgccgcgagccccaggtg
ctggtgatggcgccgacccgtgagctggcccagcaggtcgccgtgtcgttcagcaaatac
ggccagaacctcaagggcctggaagtcgccaccctgtgcggcggccaggaatatcgcgag
cagctcggcgccctcaagcgcggcgcgcaggtcgtggtgggtaccccgggccgcatcatc
gaccacctggatcgcggtagcctcaagctcgacggcctctccgccctggtgctcgacgaa
gccgacgaaatgctgcgcatgggcttcatcgatgacgtcaagcgcgttgtcgccgacacg
cccaaggatgcccagcgggtattcttctcggccacgctgccgaccgagatcgagcgcatc
gtcaatcgctacctggtcgacccggtcaaggtggccatcgaggccagcgccggcacggcc
gcgagcatcgaccagcgcatggtgcgcgtcgacggcggcgccaagctggaagccctggcg
cgcattctcgaagtggagccggtcgacggtgccatcgtcttcgtgcgtacccgtgccgcc
tgtaccaccctggtcgagcagctcaccgcacgcggcgtcaacgccgccggcctgtcgggg
gatctcgaccagagcctgcgcgagcgcaccatcacgcgcctcaagcgtggcaaggtcgac
gtgctgatcgccaccgacgtggccgcccgcggcctcgacgtgccgcgcatcacccacgtc
atcaactacgacctgccgcaggacagcgaggcctacacccaccgcatcgggcgtaccggc
cgtgccggtcggaccggcatcgccatcaccttcgtcggcttccgcgagacccgcaaggtg
cgctggatggagcaggccaccggccagcacatggccgagatgccgctgcccgacgaagcg
acgatccgcgctcaccgcgacgaggtgttctccaagcgcgtgcagggcatgatcaccgcg
ggtgccgacgagcagaaagcgctgatcgagcgcctggtggccgaaggcaacgatccgatc
gagctggcctgcgtgttcgccgccatggcgcgcgccgacgaagcaccgatcggccgtgtg
caggcgccgcgcgccgagcgtgccagcgatcgcgccccgcgtgacggcaagcccaagcgt
cgcgacagcgctccgcgtgaaggcatgacccgctaccgcgtgtcagtcggccacaaggat
ggcgtcaagcccggccagctggtcggcgcgctggccaacgaaggcggcatcgagggcgcg
cgtatcggccgtatcgatatccgcaacgccttctcggtggtcgaactgcccagctcgctg
ccgtccagcatcctggccaagatggcgcgcgcccgtgtcgccggtcgtccgctggagatc
agcgaagacagcggcgcgccggagcgtgcaccgcgccgtcgcagcgacggcgacgcgccg
attcgccgcaccagcgcctga
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