Halomonas sp. 1513: BWR19_11455
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Entry
BWR19_11455 CDS
T04761
Name
(GenBank) recombinase RecQ
KO
K03654
ATP-dependent DNA helicase RecQ [EC:
5.6.2.4
]
Organism
halo
Halomonas sp. 1513
Pathway
halo03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
halo00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
BWR19_11455
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
halo03019
]
BWR19_11455
03400 DNA repair and recombination proteins [BR:
halo03400
]
BWR19_11455
Enzymes [BR:
halo01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
BWR19_11455
Messenger RNA biogenesis [BR:
halo03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
BWR19_11455
DNA repair and recombination proteins [BR:
halo03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
BWR19_11455
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Helicase_C
DEAD
RecQ_Zn_bind
ResIII
Motif
Other DBs
NCBI-ProteinID:
APX93499
LinkDB
All DBs
Position
2531100..2533079
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AA seq
659 aa
AA seq
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MPRDSLDTTLKQVFGYDDFRPGQRQVVEALVAGRSAAAIFPTGSGKSLCYQLPALHLPHL
TLVVSPLLALMQDQLDFLARHGIAAASIDSRQSREEASAVMEGVRRGEIRVLMISVERLK
NERFRGFLRQVPVSLLVVDEAHCLSEWGHNFRPDYLKLPDYQREFGIPQALLLTATATPR
VIEDMRASFAIDAEDVTLTGFYRPNLNLLVEPVAAEQRARALRDWLRPRLEGPSPQPSIV
YVTLQKRAEQLAAYLVKAGIDARAYHAGMQSEARDALQQAFMAGEVNCIVATIAFGMGID
KANIRNVVHVDLPKSIENYSQEIGRAGRDGQPSDCLMLGGRDALAALENFVYGDTPERDG
ILRVLEVIREAAPQGQWELTLNALSQHSNIRPLPLKTLLVQLELRGVIAPRYAYFAEYRF
QYQLEPEALIERFNGERRDFVAAIVEAAPRAKTWCSLDLDALNRLGAERGLDVARARVIR
ALEYFSDQGWIALESKQMTEVYAITQPDLDVQALADALFAYFRDKERAEIARLEAMLALF
ESEQCLSRRLAEYFGDARAPQQCGHCSACRGQVARLPGGEAPAPLDARQVAALCQPVLDR
IAATTEAPAPSVDLLTRFLTGLTTPLLTKLKARQLDGFAALEAWPYAEVREALDRQFEG
NT seq
1980 nt
NT seq
+upstream
nt +downstream
nt
atgccccgcgattcactcgacaccacgctcaagcaggtcttcggctacgacgactttcgt
cccggccagcgccaggtggtcgaggcgctggtggcaggccgctcggcggcggcgatcttc
cccaccggctccggcaagtcgctgtgctatcagctgccggcgctgcacctgccgcacctg
acgctggtggtgtcgccgctgctggcactgatgcaggaccagctcgacttcctggcccgc
cacggcatcgccgccgccagcatcgactcgcgccaaagccgcgaggaggccagcgcggtg
atggaaggcgtgcgccgcggcgagattcgcgtgctgatgatctcggtggagcgcctcaag
aacgagcgcttccgcggcttcctgcgccaggtgccggtgtcgctgctggtggtcgacgag
gcccactgcctctcggaatggggccacaacttccgccccgactatctcaagctgcccgac
taccagcgcgagttcggcattccccaggcgctgctgctcaccgccaccgccacgccgcgg
gtgatcgaggacatgcgcgccagcttcgccatcgacgctgaggacgtcaccctgaccggc
ttctatcgccccaatctcaacctgctggtcgagccggtggccgccgagcagcgcgcacgc
gccttgcgcgactggctgcgcccgcgcctggaagggccctcgccgcagccgagcatcgtc
tacgtcaccctgcagaaacgcgccgagcagctcgccgcctacctcgtcaaggccggcatc
gacgcccgcgcctatcacgccggcatgcagagcgaggcccgcgacgccctgcagcaggcg
ttcatggccggcgaggtcaactgcatcgtcgccaccatcgccttcggcatgggcatcgac
aaggccaatatccgcaacgtggtgcacgtcgacctgcccaagtcgatcgagaactacagc
caggagatcggtcgcgccgggcgcgacggccagccctccgactgcctgatgctgggcggt
cgcgacgccctggcggcgctcgagaacttcgtttacggcgacaccccggagcgcgacggc
atcctgcgggtgctggaggtgattcgcgaggcggcaccacagggccagtgggagctcacc
ctgaatgccctctcgcagcacagcaatatccgcccgctgccgctcaagacgctgctggtg
cagctcgagctgcgcggggtgatcgcgccgcgctacgcctacttcgccgagtaccgcttt
cagtaccaactcgagcccgaggcgctgatcgagcgcttcaacggcgagcggcgcgacttc
gtcgccgccatcgtcgaggccgcgccgcgcgccaagacctggtgcagcctggacctcgac
gcgctcaatcggctgggcgccgagcgcggcctggatgtggcccgggcgcgggtgatccgg
gcgctggagtacttcagcgaccagggctggatcgcgctggagagcaagcagatgaccgag
gtctatgcgatcacccagccggatctcgacgtgcaggccctggccgacgcgctgttcgcc
tacttccgcgacaaggagcgcgccgagatcgcccggctcgaggcgatgctggcgctgttc
gagtcagagcagtgcctgagccggcgcctggccgagtacttcggcgatgcccgcgcgccg
cagcagtgcggccactgctcggcctgccgcggccaggtcgctcggctgcccggcggtgag
gcgccagcgccgctggacgcccggcaggtcgccgcactgtgccagccggtgctggacaga
atcgccgccaccactgaggcgccggcgcccagcgtcgatctgctgacgcggtttctgacc
ggtctgaccacgccgctgctgaccaagctcaaggcgcgccagctcgacggcttcgccgcc
ctggaggcgtggccctacgccgaggtgcgcgaggcgcttgaccggcagttcgagggctga
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