Halomonas sp. 1513: BWR19_12020
Help
Entry
BWR19_12020 CDS
T04761
Name
(GenBank) ribonuclease E
KO
K08300
ribonuclease E [EC:
3.1.26.12
]
Organism
halo
Halomonas sp. 1513
Pathway
halo03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
halo00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
BWR19_12020
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
halo03019
]
BWR19_12020
03009 Ribosome biogenesis [BR:
halo03009
]
BWR19_12020
Enzymes [BR:
halo01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.26 Endoribonucleases producing 5'-phosphomonoesters
3.1.26.12 ribonuclease E
BWR19_12020
Messenger RNA biogenesis [BR:
halo03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
BWR19_12020
Ribosome biogenesis [BR:
halo03009
]
Prokaryotic type
rRNA processing factors
BWR19_12020
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_E_G
RNase_E_G_Thio
S1
Motif
Other DBs
NCBI-ProteinID:
APX93602
UniProt:
A0A1P8R4V6
LinkDB
All DBs
Position
2657731..2660907
Genome browser
AA seq
1058 aa
AA seq
DB search
MKRMLINATQPEELRVALVDGQRLYDLDIESGAREQKKANIYRGKITRVEPSLEAAFVDF
GADRHGFLPLKEISREYFVKEPSGRPNIKEVLKEGQEVIVQVDKEERGNKGAALTTFISL
AGRFLVLMPNNPRAGGISRRIEGDERAQLKDAMGQLTLPDKMGVIVRTAGIGRSTEELQW
DLDYLVQVWESITEEAGKRPAPFLIYRESNVIIRAMRDYLRQDIGEVLIDSPEVHEEALA
FIRQVMPSYQQKIKLYADEVPLFSRFQIESQIETAYQREVKLPSGGSIVIDHTEALVSID
INSARATRGSDIEETALQTNSEAADEIARQLRLRDIGGLVVIDFIDMSPARNQREVENRM
RDALKLDRARVQIGRISRFGLMEMSRQRLRPSLGETSGVVCPRCDGQGTIRDVRSMSLSI
MRLIEEEAMKERSAQIRAILPVPVATYLLNEKRSVLAEIERRQGVQVVLLPSPEMDTPHY
DVQRLRDDHISDEDADKSSFELSTDTEIGQEPDLSDSKPIQRAEAAVKSVVHNAPAPASL
QQDDAPAPQPEAAPAVQQPATPAAANDGVFSRLVKGLSKLLGSDEAQPRQQPSQKTASDA
RQSRPQQRSDAGSSEGRQERGGRGGRSNNRRGGGRNDARQDSGRSDARQESGRQQAESRQ
PRSDAKPERTGDNRQSDDNRTPRGRGRGRQQDDERRSANRSGETRGNREASKPQTADEAP
NKAQEAPKDDGKPKRTRNNPRNRTRKHAVNPQAEAEQQRLQAQAQETPDAKPQAAPEPNA
KQPEAPKAEQAKTDAKPVEDQPKAEAPKAEQAKADAKPAAEQPKAEAPKAEQAKADAKPA
AEQPKAEAAKVDAKSAAEQPKADAPKAEEAKAEQAKADAKPGAEKPKAEAAKADAEQPKG
EAAKADAKPAAEQPKEEAPKADAKPAAEQPKVEAPKAEQAKADAKPGAEKPKADAPKADA
KADAEPPKADAPKAEQAKANAKPAAEPPKADAPKADAPKAEQAKADAKPGAEKPKAEQAK
GEESKADAAARRRRRRAHNDPREIRRREQQAKADDGQA
NT seq
3177 nt
NT seq
+upstream
nt +downstream
nt
atgaaacggatgctcatcaacgcgacacagcctgaagagctgcgtgtcgccctcgtcgat
ggacagcgcctgtacgacctggatatcgaatccggcgcacgggagcagaaaaaagccaat
atctaccgcggcaagatcacccgggtagaaccctccctggaagccgccttcgtcgacttt
ggcgccgaccgccacggcttcctgccgctcaaggagatctcccgcgagtacttcgtcaag
gagccctccggccgtcccaacatcaaggaagtgctcaaggaaggccaggaagtcatcgtc
caggtcgacaaggaggagcgcggtaacaagggtgccgccctgaccaccttcatcagcctg
gccggccgtttcctggtattgatgcccaacaacccccgcgccggcggcatctcgcgccgc
attgagggtgacgagcgcgcccagctcaaggacgccatgggtcagctgaccctgcccgac
aagatgggcgtgatcgtgcgcaccgccggcatcggccgctccaccgaagagctgcagtgg
gacctcgactacctggtacaggtgtgggaatcgatcaccgaagaggccggcaagcgccct
gcgcccttcctgatctaccgcgagtccaacgtcatcatccgcgccatgcgcgactacctg
cgccaggacatcggcgaggtgctgatcgatagccccgaggtgcacgaggaagcgctggcc
ttcattcgccaggtgatgccctcctaccagcagaagatcaagctctacgccgacgaggtg
ccgctgttctcgcgcttccagatcgagtcgcagatcgagaccgcctaccagcgtgaagtc
aagctgccctccggcggctccatcgtcatcgaccataccgaggcactggtctccatcgat
atcaactcggcccgcgccacccgcggcagcgacatcgaagagaccgcgctgcagaccaat
tccgaggccgccgacgagatcgcccgtcagttgcgcctgcgcgatatcggcggcctggtg
gtgatcgacttcatcgacatgagcccagcgcgcaaccagcgcgaagtcgagaaccgcatg
cgcgacgccctcaagctcgaccgcgcccgcgtgcagatcggccgcatctcgcgcttcggc
ctgatggagatgtcacgccagcgcctacgtccctcgctgggcgagaccagcggcgtggtc
tgtccgcgctgcgacggccagggcaccatccgcgacgtgcgttcgatgtcgctgtcgatc
atgcgcctgatcgaagaggaggcgatgaaggagcgcagcgcccagatccgcgccatcctg
ccggtgccggtggccacctacctgctcaacgagaagcgcagcgtgctggccgagatcgaa
cgccgccagggcgtccaggtggtgctgctgccaagccccgagatggacaccccgcactac
gacgtgcagcgcctgcgcgacgaccatatcagcgacgaggacgccgacaagtcgagcttc
gagctgtccaccgataccgagatcggccaggagccggacctcagcgacagcaaaccgata
cagcgtgccgaagcggcggtcaaaagcgtggtgcataacgccccggcaccggcctccctg
cagcaagatgatgccccggccccccagcccgaggcggcccccgcggtccagcagccggcg
acaccggcggcagccaacgacggcgtattctcacggctggtcaagggcctcagcaaactg
ctcggcagcgacgaggcgcagccgcgccagcagccctctcagaaaaccgccagcgacgct
cgccagtcacgcccccagcagcgcagcgatgccggcagcagcgaaggtcgccaggagcgc
ggcggacgcggtggacgcagcaacaatcgtcgcggcggcggccgcaacgatgctcgccag
gacagcggtcgtagcgacgcccgccaggagagtggccgtcagcaggccgagtcgcgccag
ccgcgcagcgacgccaagcccgagcgcaccggcgacaaccgccagagcgacgataaccgc
accccccgcggtcgtggccgtggtcgtcagcaggacgatgagcgccgcagcgccaaccgc
tcaggcgagacccgtggcaatcgcgaagcgagcaagccccagaccgccgacgaggccccg
aacaaggcccaggaggcgcccaaggacgacggcaagcccaagcgtacgcgcaacaacccg
cgcaaccgcactcgcaagcacgcggtgaacccgcaggccgaggccgagcagcagcgcctg
caggcacaggcccaggaaacgcctgacgccaagccgcaagccgcacccgagcccaacgcc
aagcagcccgaagcgcccaaggccgagcaagccaagaccgacgccaagcccgtcgaggat
cagcccaaggcagaggcgcccaaggccgagcaagccaaggcagacgccaagcccgccgcc
gagcagcccaaggcagaggcgcccaaggccgagcaagccaaggcagacgccaagcccgcc
gccgagcagcccaaggcggaggcagccaaggtagatgccaagtctgccgccgagcagccc
aaggcagacgcgcccaaggccgaagaagccaaggccgagcaagccaaggccgacgccaag
cctggcgctgaaaagcccaaggccgaggcagccaaggccgacgccgagcagcccaaggga
gaggcggccaaggccgacgccaagcccgccgccgagcagcccaaggaagaggcgcccaag
gccgacgccaagcccgctgccgagcagcccaaagtcgaggcacccaaggccgagcaagcc
aaggccgacgccaagcctggcgctgaaaagcccaaggcagacgcgcccaaggcagatgcc
aaggcagacgccgagccgcccaaggcagacgcgcccaaggccgagcaagccaaggccaac
gccaagcccgccgccgagccgcccaaggcagacgcgcccaaggcagacgcgcccaaggcc
gagcaagccaaggcagatgccaagcctggcgctgaaaagcccaaggccgagcaagccaag
ggcgaggaaagcaaggccgacgctgcggcgcgccgccgccggcgccgtgcccataatgac
ccgcgcgagatccgccgccgcgagcagcaggccaaggccgacgacggccaagcgtga
DBGET
integrated database retrieval system
