Halorubrum sp. PV6: DOS48_00405
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Entry
DOS48_00405 CDS
T05770
Name
(GenBank) transcription initiation factor IIB family protein
KO
K03124
transcription initiation factor TFIIB
Organism
halp
Halorubrum sp. PV6
Pathway
halp03022
Basal transcription factors
Brite
KEGG Orthology (KO) [BR:
halp00001
]
09120 Genetic Information Processing
09121 Transcription
03022 Basal transcription factors
DOS48_00405
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
halp03021
]
DOS48_00405
Transcription machinery [BR:
halp03021
]
Eukaryotic type
RNA polymerase II system
Basal transcription factors
TFIIB
DOS48_00405
Prokaryotic type
Archaeal type
TFB
DOS48_00405
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TFIIB
Zn_Ribbon_TF
HTH_Crp_2
DZR
Zn_ribbon_NUD
RB_B
Cas12f1-like_TNB
DZR_2
Zn_ribbon_3
Cyclin_N
DUF7129
HTH_3
Motif
Other DBs
NCBI-ProteinID:
AZQ13398
UniProt:
A0A3Q9EAT9
LinkDB
All DBs
Position
complement(84922..85911)
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AA seq
329 aa
AA seq
DB search
MSDARSTQTRSPRTQTDDAATADRAERPTRAATVEDGDATATNADARETCPECGGRTRVD
AAERVCADCGLVVEADRIDHGPEWRSFDDDDTNPKRTGAPLTRSRHDRGLSTEIGRSTKV
KGRKRRRLARMRTQHNRAQISSKRDRNKVYAYTEIRRLTGALELPDSVRDTACTLFDSAQ
DESLLRGRSLEGFAAACLYVACRTADVARTVGEICAEAKATEAEHRAAFDAMNRELGLPI
APTGPAEYLPRFASDLGCAPELERRAGELAERTVEEGIANGRNPVGVAAACLYTAARELG
ADCTQQEAADVAGVTPVTVRRTYVDLTES
NT seq
990 nt
NT seq
+upstream
nt +downstream
nt
atgagtgacgcacgctcgacgcagactcgttcgccccgtacccagaccgacgacgccgcg
accgcggaccgcgccgagcgcccgacccgagcggcgaccgtcgaggacggcgacgccacg
gcgacgaacgccgacgcccgcgagacgtgtccggagtgcggtggccggacgcgcgtcgac
gccgcagagcgcgtctgtgccgactgcgggctcgtcgtcgaggccgaccgaatcgaccac
ggccccgagtggcgctcgttcgacgacgacgacacgaaccccaagcgcaccggcgcaccc
ctgacgcgctcgcgtcacgaccgcgggctctcgacggagatcggccggtcgacgaaggtg
aaagggcgcaagcggcggcgactcgcacggatgcgcacccagcacaaccgcgcgcagata
tcctcgaaacgcgatcgcaacaaggtgtacgcctacaccgagatacggcggctcacggga
gccttagagctgcccgacagcgttcgcgacacggcctgtacgctgttcgactccgcacag
gacgagagcctgctccgcggtcgctcgcttgagggctttgcggccgcctgcctctacgtc
gcctgccgcaccgccgacgtggcgcggaccgtcggtgagatctgcgccgaagcgaaggcg
acggaggccgaacaccgggccgccttcgacgcgatgaaccgcgaactcggcctgccgatc
gcgccgaccggacccgccgagtacctcccgcggttcgcgagcgacctcggctgtgcgccc
gagttggagcgtcgcgccggagagctggccgagcggaccgtcgaggagggcatcgcgaac
ggccgcaacccggtgggcgtcgccgccgcgtgcctgtacacggccgcccgagagctggga
gccgactgcacgcagcaggaggccgccgacgtggccggcgtgacgcccgtgaccgtacgg
cggacgtacgtcgacctgaccgagtcgtga
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