Halorubrum sp. PV6: DOS48_00855
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Entry
DOS48_00855 CDS
T05770
Symbol
prf1
Name
(GenBank) peptide chain release factor 1
KO
K03265
peptide chain release factor subunit 1
Organism
halp
Halorubrum sp. PV6
Pathway
halp03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
halp00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
DOS48_00855 (prf1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
halp03019
]
DOS48_00855 (prf1)
03012 Translation factors [BR:
halp03012
]
DOS48_00855 (prf1)
Messenger RNA biogenesis [BR:
halp03019
]
Eukaryotic type
mRNA surveillance and transport factors
Surveillance factors
Surveillance complex
DOS48_00855 (prf1)
Translation factors [BR:
halp03012
]
Eukaryotic type
Release factors
DOS48_00855 (prf1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
eRF1_2
eRF1_3
eRF1_1
baeRF_family10
acVLRF1
ZnF_RZ-type
RbpA
Zn_ribbon_8
Motif
Other DBs
NCBI-ProteinID:
AZQ13479
UniProt:
A0A3Q9EB23
LinkDB
All DBs
Position
188664..189914
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AA seq
416 aa
AA seq
DB search
MSSDAQAASEDRRKYEFRKVIEELRDFEGSGTQLVTIYIPEDRQVSDVVAHVTQEHSEAS
NIKSKQTRTAVQDALTSIKDRLRYYDTYPPENGMVIFSGAIDAGGGQTDMVTRTLESPPQ
PVESFRYHCDSEFLTEPLEHMLEDTGLFGLIVLDRREANVGWLKGKRVEAVKSASSLVPG
KQRKGGQSAQRFARLRLEAIDNFYQEVAGMADDLFVDKRHEIDGILVGGPSPTKDEFLDG
DYLHHELQDKVLGKFDVAYTDESGLKDLVDNASEALADQEIVEDKRNMEEFFENLNTGEE
ATYGFDQTRRNLIMGSVDRLLISEDLRSDVVVYECPNGHEEYEVVDSRHSTPAHECSECG
EDAEVDEREDVIEHLMAIAEQRGTDTKFISTDFEKGEQLLDAFGGIAGILRYSTGV
NT seq
1251 nt
NT seq
+upstream
nt +downstream
nt
atgagtagcgacgcccaagcggcgagcgaggaccggcggaagtacgagttccgcaaggtc
atcgaggagctccgagacttcgagggctccgggacgcagctcgtcaccatctacatcccc
gaggatcggcaggtctccgacgtggtcgcgcacgtcacccaggaacacagcgaggcgtcc
aacatcaagtccaagcagacgcggacggcggttcaagacgcgctgacctcgatcaaagac
cggctccgctactacgacacctacccaccggaaaacgggatggtgatcttctccggcgcc
atcgacgccggcggcggccagaccgacatggtcacccggaccctcgaatcgccgccccag
cccgtcgagtcgttccggtaccactgcgactcggagttcctcaccgagccgctagagcac
atgctcgaagacaccggcctcttcgggctcatcgtcttagaccggcgtgaggccaacgtc
ggctggctgaaaggcaagcgcgtcgaggcggtcaagtccgcctcctcgctcgtccccggc
aaacagcggaaggggggacagtccgcccagcggttcgcccggctccggctcgaagcgatc
gacaacttctaccaggaggtcgcggggatggccgacgacctgttcgtcgacaagcgccac
gagatcgacggcatccttgtcggcggcccctcgccgacgaaagacgagttcctcgacggc
gactacctccaccacgaactgcaggacaaggtcctcggcaagttcgacgtggcgtacacc
gacgagtccggcctgaaagacctcgtcgacaatgcgagcgaagcgctcgccgaccaggag
atcgtcgaggacaaacgcaacatggaggagttctttgagaacctcaacaccggcgaggag
gccacctacgggttcgaccagacccggcgcaacctcatcatggggtcggtcgaccgcctg
ctcatctccgaggacctccgctccgacgtggtcgtctacgagtgtccgaacggtcacgag
gagtacgaggtcgtcgactcgcgacactcgacgcccgcacacgagtgttccgagtgcggc
gaagacgccgaagtcgacgagcgcgaagacgtgatcgaacacctgatggccatcgccgaa
cagcgcggcaccgacactaagttcatctccacagacttcgaaaagggcgaacagctcctc
gacgcgttcggcggcatcgcgggtattctgcggtactcgacgggcgtctaa
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