Halorubrum sp. PV6: DOS48_01005
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Entry
DOS48_01005 CDS
T05770
Name
(GenBank) ATP-dependent helicase
KO
K03657
ATP-dependent DNA helicase UvrD/PcrA [EC:
5.6.2.4
]
Organism
halp
Halorubrum sp. PV6
Pathway
halp03420
Nucleotide excision repair
halp03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
halp00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
DOS48_01005
03430 Mismatch repair
DOS48_01005
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
halp03400
]
DOS48_01005
Enzymes [BR:
halp01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
DOS48_01005
DNA repair and recombination proteins [BR:
halp03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
GGR (global genome repair) factors
DOS48_01005
MMR (mismatch excision repair)
Other MMR factors
DOS48_01005
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrD-helicase
AAA_19
UvrD_C
UvrD_C_2
AAA_30
DEAD
AAA_11
Herpes_ori_bp
Motif
Other DBs
NCBI-ProteinID:
AZQ13509
UniProt:
A0A3Q9E9G4
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All DBs
Position
complement(223581..225425)
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AA seq
614 aa
AA seq
DB search
MTDPTVTRLFGGPGSGKTTALLDRVEGILDDESADVRDVLVVSYTRAAAAEIRERLAERL
DISPRSLQGNVSTMHAKAYELLDLSRGDVVGEDDKEEFCEEYGIEFEDQHGGAGRRTARS
TTIGNKIIATSQWLQRTERDVADWYDVPFQWNVEEVRLPPEEDPNAQQGNKYTPTWPSDD
DRIDIPETIRAWRSYKGDHDLVGFADMLERVAQRSLVPNVDYLIIDEFQDITTLQYNVFE
EWRPHMEKVLIAGDDDQVVYAWQGADPDLLLDTDVDEDVVLPNSYRLPSEILNVVNAEIR
HIDKRQEKDLHPRKEGGTVEAIESPSMLELVRNVRYTVEDDEGSVMCLFRARYQMFDFID
EFIDHGIPFTMLTDGRMWTDRVQDYVSAIEKADAGDPVNGLEARRLADMLQDSAFGTHER
DEFYDFLDDREEAADSDDVTQISVTSDELDEYIPFMPDASSADDMVRKVTSFQRKSMGAY
FGGDYEGMDPTRVRVGTIHSAKGREADHVFVATDLTEKVVEQMAASIDDPTDVDGVDEFT
KTTSPVPVLTDNERRVFYVGMSRARERLVIMESLISGAPTLPISVLLFNEIRDEPAQDLV
EEVQAELAVPEPEP
NT seq
1845 nt
NT seq
+upstream
nt +downstream
nt
atgaccgatcccacggtgacgcgactgttcggcggtcccggcagcgggaagaccacggct
ctgttggaccgcgtcgaggggatcctcgacgacgagagcgccgacgttcgcgacgtactc
gtcgtctcgtacacacgcgcggccgcagccgagatccgcgagcggctcgccgagcggctc
gacatctccccgcgaagcctccaggggaacgtcagcaccatgcacgcgaaggcgtacgag
ctgttggacctttctcgcggcgacgtggtgggcgaagacgacaaggaggaattctgtgag
gagtacggcatcgagttcgaagaccaacacggcggcgccgggcggcggacggctcgctcg
acgacgatcggcaacaagataatcgccacctcgcagtggctccagcgcaccgagcgcgac
gtggccgactggtacgacgtgcccttccagtggaacgtcgaggaggtccggctcccgccc
gaggaggacccgaacgcccagcaggggaacaagtacacgccgacgtggccctccgacgac
gaccgcatcgacatccccgagacgattcgcgcgtggcggtcttataaaggggaccacgat
ctggtcggcttcgcggacatgctcgaacgggtcgcccagcgctcgctggtgccgaacgtc
gattacctgatcatcgacgagttccaggacatcacgacgctgcagtacaacgtcttcgag
gagtggcgcccgcacatggagaaggtgctcatcgccggcgacgacgaccaggtcgtctac
gcgtggcagggcgccgaccccgacctcctcctcgacaccgacgtcgacgaggacgtggtc
ctcccgaactcctaccggctcccctccgagatcctcaacgtcgtcaacgccgagatccgt
cacatcgacaagcgacaggagaaggacctccacccccgcaaggagggcggcaccgtcgag
gcgatagagtcgccctcgatgctcgaactcgtccggaacgtccggtacacggtcgaagac
gacgagggcagcgtgatgtgtctgttccgcgcgcgctaccagatgttcgacttcatcgac
gagttcatcgaccacggcatcccgttcacgatgctgaccgacgggcggatgtggaccgac
cgcgtccaggactacgtcagcgcgatcgagaaggccgacgcgggcgaccccgtgaacggg
ctcgaagcccggcggctcgccgacatgctacaggactcggcgttcggcacccacgagcgc
gacgagttctacgacttcctcgacgaccgcgaggaggccgccgacagcgacgacgtcacc
cagatttcggtgacgagcgacgagctcgacgagtacatcccgttcatgcccgacgcgagc
agcgcggacgacatggtcaggaaggtgacgagcttccagcgcaagtcgatgggcgcgtac
ttcggcggcgactacgaggggatggacccgacccgcgtccgcgtcggcaccatccactcc
gcgaagggccgcgaggccgaccacgtgttcgtggcgactgacttgacggagaaggtggtc
gagcagatggccgcctctatcgatgacccgaccgacgtcgacggcgtcgacgagttcacg
aagaccaccagcccggttcccgtcctcaccgacaacgagcgccgcgtgttctacgtcggc
atgtctcgtgcccgcgagcggctcgtgatcatggagagcctcatcagcggggcgccgacg
ctcccgatcagcgtgctgctcttcaacgagatccgcgacgagcccgcacaggatctcgtc
gaagaagtgcaggcggagttggcggttcccgaaccggagccgtga
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