Halorubrum sp. PV6: DOS48_10675
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Entry
DOS48_10675 CDS
T05770
Name
(GenBank) RNA-splicing ligase RtcB
KO
K14415
tRNA-splicing ligase RtcB (3'-phosphate/5'-hydroxy nucleic acid ligase) [EC:
6.5.1.8
]
Organism
halp
Halorubrum sp. PV6
Brite
KEGG Orthology (KO) [BR:
halp00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
halp03016
]
DOS48_10675
Enzymes [BR:
halp01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.8 3'-phosphate/5'-hydroxy nucleic acid ligase
DOS48_10675
Transfer RNA biogenesis [BR:
halp03016
]
Eukaryotic type
tRNA spricing factors
tRNA splicing ligase complex
DOS48_10675
Prokaryotic type
tRNA splicing ligases
DOS48_10675
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RtcB
Motif
Other DBs
NCBI-ProteinID:
AZQ15256
LinkDB
All DBs
Position
complement(2144833..2146341)
Genome browser
AA seq
502 aa
AA seq
DB search
MTTREFDGIRLEKVRDHVWEIPREGDMNVPARVLASESLLEAIGDDDSLQQLKNATHLPG
MVEPALCMPDGHQGYGFPVGGVGAIDARNGCISPGAVGYDINCGVRMVRTNLTYDDVRGR
EAELVDALFEAVPSGLGGGGVIDGDADAIEGALERGVEWAVEEGYGIESDLARCEDEGRR
PDARPEYVSQKAMDRGRNQMGSLGSGNHFLEVQRVTDVFREDVAEAYGLAEDGIVVLIHC
GSRGLGHQTCNDYLRRIEKEHGDLLDELPDKELAAAPAGSELAEEYYGAMGACINFAWVN
RQLITHQARETFGEVFDADPIADLGMELLYDVAHNIAKKEVHEVGVDEAGRPAVGDEAVD
RADREVYVHRKGATRAFPAGNEAVPAVYRDVGQPVIIPGSMGAGSYVLRGGDESMSVSFG
STAHGAGRLMSRTQAKQEFWGGDVQDDLEAGQQIYVKAQSGATIAEEAPGVYKDIDEVIR
VSDDLGIGDKVARTFPVCNIKG
NT seq
1509 nt
NT seq
+upstream
nt +downstream
nt
atgaccacgcgcgagttcgacgggatccggttagagaaggtccgcgaccacgtctgggag
atcccccgcgagggcgacatgaacgtccccgcgcgagtgctcgccagcgagtcgctgctc
gaagcgatcggcgacgacgactcgctgcaacagctcaaaaatgcgacccaccttccgggg
atggtcgagcccgcgctctgtatgccggacggccaccaggggtacggcttccccgtcggc
ggcgtcggcgccatcgacgcccgaaacggctgtatttcgcccggagcggtcggctacgac
atcaactgcggggttcggatggtccggacgaacctcacctacgacgacgtgcgcggccgc
gaggcggagctcgtcgacgcgctgttcgaggctgtcccctccggcctcggcgggggcggc
gtcatcgacggcgacgccgacgccatcgagggcgccctcgaacgcggcgtcgagtgggcg
gtcgaggaggggtacgggatcgaaagcgacctcgcgcgctgtgaggacgaggggcgacgg
cccgacgcgcgaccggagtacgtctcacagaaggcgatggaccgcggccgcaaccagatg
gggtcgctcggctccgggaaccacttcttagaggtgcaacgggtcacggacgtgttccgc
gaggacgtggccgaggcgtacgggctcgcggaggacggcatcgtcgtcctgatccactgc
gggagccgcgggctcggccaccagacctgcaacgactacctccggcggatcgagaaggaa
cacggcgacttgctcgacgaactccccgacaaggagctcgcggccgcgccggccggctcc
gagctggccgaggagtactacggcgcgatgggcgcctgcatcaacttcgcgtgggtgaac
cgccagctcatcacccatcaggcccgcgagacgttcggcgaggtgttcgacgccgacccg
atagccgacctcgggatggagctgctgtacgacgtggcccacaacatcgcgaaaaaagag
gtccacgaggtcggcgtcgacgaggcgggccggcccgcggtcggcgacgaggcggtcgac
cgggccgaccgagaggtgtacgtccaccgcaagggcgccacccgcgcgttccccgccggg
aacgaggcggtgccggccgtgtaccgcgacgtgggccaacccgtcatcatccccggcagc
atgggggcgggctcgtacgtgcttcgcggtggcgacgagtcgatgtcggtgtccttcggc
tcgaccgctcacggcgccggccggctcatgagccggacgcaggcgaaacaggagttctgg
ggcggcgacgtgcaagacgacctcgaagccggccagcagatatacgtgaaagcacagtcc
ggcgccaccatcgccgaggaggcgcccggcgtctacaaggacatcgacgaggtgatccgc
gtcagcgacgacctcgggatcggcgacaaggtcgcgcggacgttcccggtgtgtaacatc
aaaggatag
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