Halorubrum sp. CBA1229: Hrr1229_003085
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Entry
Hrr1229_003085 CDS
T06658
Name
(GenBank) transcription initiation factor IIB
KO
K03124
transcription initiation factor TFIIB
Organism
halq
Halorubrum sp. CBA1229
Pathway
halq03022
Basal transcription factors
Brite
KEGG Orthology (KO) [BR:
halq00001
]
09120 Genetic Information Processing
09121 Transcription
03022 Basal transcription factors
Hrr1229_003085
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
halq03021
]
Hrr1229_003085
Transcription machinery [BR:
halq03021
]
Eukaryotic type
RNA polymerase II system
Basal transcription factors
TFIIB
Hrr1229_003085
Prokaryotic type
Archaeal type
TFB
Hrr1229_003085
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TFIIB
Zn_Ribbon_TF
Trm112p
HTH_Tnp_ISL3
Sigma70_r4
A2L_zn_ribbon
Lar_restr_allev
Motif
Other DBs
NCBI-ProteinID:
QKY15906
UniProt:
A0A7D5C8T3
LinkDB
All DBs
Position
complement(617662..618636)
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AA seq
324 aa
AA seq
DB search
MSERLHTRGSRSRTETDEEESEQTDETLSCPECDGNVINDEEHGESVCADCGLVVEADSV
DRGPEWRAFDSREKDEKSRVGAPTTNTMHDKGLSTNIDWRDKDAYGRSLGARQRQKMQRL
RKWNERFRTRDSKERNLKQALGEIDRMASAQGLPDNVRETASVIYRRALDEDLLPGRSIE
GVSTSCVYAAARMAGVPRSLDEIADVSRVEKAEIARTYRYVVRELKLEVKPADPEQYVPR
FASDLELSEESEMRAKSLLRNAKEKGVHSGKSPVGLAAAAVYAAALLTNEKTTQAAVSEV
ADISEVTIRNRYHELLEAEDGLVA
NT seq
975 nt
NT seq
+upstream
nt +downstream
nt
atgagtgaacgattacacacgcgggggagtcgctcccgaaccgagacggacgaggaggaa
tcggaacagaccgacgagacgctcagctgtcccgaatgcgacgggaacgtcatcaacgac
gaggagcacggcgagagcgtctgcgccgactgcgggctcgtcgtcgaggcggactcggtc
gaccgcgggccggagtggcgcgcgttcgactcccgcgagaaggacgagaagagccgcgtc
ggcgccccgacgaccaacacgatgcacgacaaggggctctcgacgaacatcgactggcgc
gacaaggacgcgtacggccggtcgctcggcgcccgccagcgccagaagatgcagcggctc
cgcaagtggaacgagcggttccgcacccgcgactccaaggagcggaacctgaagcaggcg
ctcggcgagatcgaccgcatggccagcgcgcaggggctcccggacaacgtccgcgagacc
gcctcggtcatctaccgccgcgcgctcgacgaggacctgctccccggtcgctccatcgag
ggcgtctccacctcctgcgtgtacgccgccgcccggatggccggcgtcccgcgcagcctc
gacgagatcgccgacgtctcccgcgtcgagaaggccgagatcgcccggacgtaccgctac
gtcgtccgcgagctcaagctcgaagtgaagccggccgaccccgagcagtacgtcccccgc
ttcgcctccgacctggagctctccgaggagtccgagatgcgcgcgaagagcctcctgcgc
aacgccaaagagaagggcgtccactcgggcaagtcgccggtcggcctcgcggccgccgcc
gtctacgccgccgccctcctcaccaacgagaagacgacgcaggccgccgtctcggaggtc
gccgacatctccgaggtcaccatccggaaccggtaccacgagctgttggaggccgaggac
ggcctcgtcgcgtaa
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