Halorubrum sp. CBA1229: Hrr1229_005895
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Entry
Hrr1229_005895 CDS
T06658
Name
(GenBank) ATP-dependent helicase
KO
K03657
ATP-dependent DNA helicase UvrD/PcrA [EC:
5.6.2.4
]
Organism
halq
Halorubrum sp. CBA1229
Pathway
halq03420
Nucleotide excision repair
halq03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
halq00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
Hrr1229_005895
03430 Mismatch repair
Hrr1229_005895
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
halq03400
]
Hrr1229_005895
Enzymes [BR:
halq01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
Hrr1229_005895
DNA repair and recombination proteins [BR:
halq03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
GGR (global genome repair) factors
Hrr1229_005895
MMR (mismatch excision repair)
Other MMR factors
Hrr1229_005895
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrD-helicase
AAA_19
UvrD_C
UvrD_C_2
AAA_30
Viral_helicase1
AAA_22
DEAD
AAA_11
Herpes_ori_bp
AAA_12
Motif
Other DBs
NCBI-ProteinID:
QKY16432
UniProt:
A0A7D4YC66
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All DBs
Position
1158901..1160745
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AA seq
614 aa
AA seq
DB search
MTEPTVTRLFGGPGSGKTTALLDRVEGILEDDDADVRDVLVVSYTRAAAAEIRERLAERL
DVSPRSLQGNVSTMHAKAYELLDLSRGDVVGDDDKEAFCEEYGIEFEDQHGGAGRRTARS
TTIGNKIIATSQWLQRTERDVADWYDVPFQWNVEEVRLPPEEDPNAQQGNKYTPTWPSDD
DRIDIPETIRAWRGYKGDNDLVGFADMLERVAQRSLVPNVDYLIIDEFQDITTLQYNVFE
EWRPHMEKVLIAGDDDQVVYAWQGADPDLLLDTDVDEDVVLPNSYRLPSEILNVVNAEIR
HIDKRQEKDLHPRKEGGTVEAIQSPSMIELVRNVRYTVEDDEGDIMCLFRARYQMFDFID
EFIDHGIPFTMLTDGRMWTDRVQDYVSAIEKAEAGDPVNGLEARRLADMLQDSAFGTHDR
DEFYDFLDDREEAADADDVSLIEVTADELDEHIPFMPDTASADDMVRKVTSFQRKSMGAY
FDGDYEGMDPTRVRVGTIHSAKGREADHVFVATDLTEKVVEQMAASIEDPTDVDGVEEFT
KATSPVPVLTDNERRVFYVGMSRARERLVIMESLISGAPTLPISVLLFNELRDETPEELV
EEAQAELAVPEPEP
NT seq
1845 nt
NT seq
+upstream
nt +downstream
nt
atgaccgagcccacggtgacgcgactgttcggcggtccgggcagcgggaagaccacggcg
ctactcgaccgcgtcgaagggatcctcgaagacgacgacgccgacgtccgcgacgtgctc
gtcgtctcgtacacgcgcgcggccgccgccgagatccgcgagcgcctcgcggagcggctc
gacgtctccccccgcagcctccaggggaacgtcagcaccatgcacgcgaaggcgtacgag
ctgctcgacctctcccgaggcgacgtcgtgggcgacgacgacaaggaggcgttctgcgag
gagtacggcatcgagttcgaggaccagcacggcggcgccggccgccggaccgcccggtcg
acgacgatcggcaacaagatcatcgccacctcacagtggctccagcgcaccgagcgcgac
gtcgccgactggtacgacgtccccttccagtggaacgtcgaggaggtccggctgcccccc
gaggaggaccccaacgcccagcaggggaacaagtacaccccgacgtggccctccgacgac
gaccggatcgacatcccggagacgatccgcgcgtggcgcggctacaagggcgacaacgac
ctcgtcggcttcgccgacatgctcgaacgggtcgcgcagcgctcgctcgtccccaacgtc
gactacctgatcatcgacgagttccaggacatcacgacgctgcagtacaacgtcttcgag
gagtggcgcccgcacatggagaaggtgctcatcgccggcgacgacgaccaggtcgtctac
gcgtggcagggcgccgaccccgacctcctcctcgataccgacgtcgacgaggacgtggtg
ctcccgaactcctaccggctcccctccgagatcctcaacgtcgtcaacgcggagatccgc
cacatcgacaagcgccaggagaaggacctccacccgcgcaaggagggcggcaccgtcgag
gcgatccagtcgccgtcgatgatcgagctcgtccggaacgtccggtacaccgtcgaggac
gacgagggcgacatcatgtgcctgttccgcgcccgctaccagatgttcgacttcatcgac
gagttcatcgaccacgggatcccgttcacgatgctgaccgacggccggatgtggaccgac
cgcgtgcaggactacgtcagcgccatcgagaaggcggaggccggcgacccggtgaacggg
ctggaggcccggcgcctcgccgacatgctccaggactcggcgttcgggacccacgaccgc
gacgagttctacgacttcctcgacgaccgcgaggaggcggccgacgccgacgacgtctcc
ctgatcgaggtgacggccgacgagctcgacgagcacattccctttatgccggacaccgcg
agcgccgacgacatggtccggaaagtgacgagcttccagcggaagtcgatgggcgcgtac
ttcgacggcgactacgaggggatggacccgacccgcgtccgcgtcggcaccatccactcc
gcgaagggccgcgaggccgaccacgtgttcgtcgcgaccgacctcaccgagaaggtcgtc
gagcagatggcggcctccatcgaggacccgaccgacgtcgacggcgtcgaggagttcacg
aaggcgacgagccccgtccccgtcctcaccgacaacgagcgccgggtgttctacgtcggg
atgtcccgcgcccgcgagcggctcgtgatcatggagagcctgataagcggcgcgccgacg
ctcccgatcagcgtcctgctgttcaacgagctccgcgacgagacccccgaggagctcgtc
gaggaggcccaggccgagctggcggtccccgaaccagagccgtga
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