Halorubrum sp. CBA1229: Hrr1229_009835
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Entry
Hrr1229_009835 CDS
T06658
Name
(GenBank) RtcB family protein
KO
K14415
tRNA-splicing ligase RtcB (3'-phosphate/5'-hydroxy nucleic acid ligase) [EC:
6.5.1.8
]
Organism
halq
Halorubrum sp. CBA1229
Brite
KEGG Orthology (KO) [BR:
halq00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
halq03016
]
Hrr1229_009835
Enzymes [BR:
halq01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.8 3'-phosphate/5'-hydroxy nucleic acid ligase
Hrr1229_009835
Transfer RNA biogenesis [BR:
halq03016
]
Eukaryotic type
tRNA spricing factors
tRNA splicing ligase complex
Hrr1229_009835
Prokaryotic type
tRNA splicing ligases
Hrr1229_009835
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RtcB
Motif
Other DBs
NCBI-ProteinID:
QKY17173
LinkDB
All DBs
Position
1979845..1981353
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AA seq
502 aa
AA seq
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MTTREFDGIRLEKVRDHVWEIPREGEMNVPARVLASESLLEEIGDDDSLQQLKNATHLPG
MVEPAICMPDGHQGYGFPVGGVGAIDARTGCISPGAVGYDINCGVRMIKTNLKYNDIKGR
ESELVDALFEAVPSGLGGGGVIDGDADAIEGALERGVEWAVEEGYGIESDLARCEDEGRR
PDARPEYVSQKAMDRGRNQMGSLGSGNHFLEVQRVTDVFLPEVAEAYGLEEDGIVVLIHC
GSRGLGHQTCNDYLRRIEKEHGDLLDSLPDKELAAAPAGSELADEYYGAMGACINFAWVN
RQLITHQARETFGEVFDADPIEDLGMELLYDVAHNIAKKETHEVGVDADGRPAVGDEAVD
RAERELYVHRKGATRAFPAGHEDVPATYRDVGQPVIIPGSMGAGSYVLRGGAESLSVSFG
STAHGAGRLMSRTQAKQEFWGGDVQDDLEDGQQIYVKAQSGATIAEEAPGVYKDIDEVIR
VSDELGIGDKVARTFPVCNIKG
NT seq
1509 nt
NT seq
+upstream
nt +downstream
nt
atgaccacgcgcgagttcgacgggatccgactggagaaggtgcgcgaccacgtctgggag
atcccccgcgagggcgagatgaacgtccccgcgcgggtgctcgccagcgagtcgctactg
gaggagatcggcgacgacgactcgctccagcagctgaagaacgcgacgcacctccccgga
atggtcgagcccgcgatctgcatgcccgacggccaccaggggtacggcttccccgtcggc
ggcgtcggagccatcgacgcccgtactggctgtatttcgcccggagcggtcggctacgac
ataaattgcggcgtaagaatgataaaaacaaatctaaaatataatgatataaaaggccgc
gagtccgaactcgtcgacgcgctcttcgaggcggtcccctccgggctcggcggcggcggc
gtgatcgacggcgacgccgacgcgatcgagggcgccttagagcgcggcgtcgagtgggcg
gtcgaggagggatacgggatcgagagcgacctcgcgcgctgcgaggacgaggggcgccgg
cccgacgcgcggccggagtacgtctcccagaaggcgatggaccgcgggcgcaaccagatg
ggctcgctcggctcggggaaccacttcctcgaggtccagcgcgtcaccgacgtgttcctg
cccgaggtcgccgaggcgtacggactcgaggaggacgggatcgtcgtcctgatccactgc
gggagccgcgggctcggccaccagacctgcaacgactacctgcgacggatcgagaaggag
cacggcgacctcctcgactcgctgccggacaaggagctcgcggccgcgcccgccggctcg
gagctggccgacgagtactacggcgcgatgggcgcgtgcatcaacttcgcgtgggtgaac
cgccagctgatcacccaccaggcccgcgagacgttcggtgaggtgttcgacgccgatccg
atcgaggacctcgggatggagctgctgtacgacgtggcgcacaacatcgcgaagaaggag
acccacgaggtcggcgtcgacgccgacgggcgccccgcggtcggcgacgaggccgtggac
cgcgccgagcgggagctgtacgtccaccgcaagggtgccacccgcgcgttccccgcgggc
cacgaggacgtgcccgcgacgtaccgcgacgtcggccagcccgtgatcatccccgggagc
atgggcgcgggctcgtacgtgctccgcggcggggcggagtcgctgtcggtgtcgttcggt
tcgaccgcccacggcgccggtcggctgatgagccggacgcaggcgaaacaggagttctgg
ggcggcgacgtgcaggacgacctcgaggacggccagcagatctacgtgaaggcgcagtcg
ggcgcgaccatcgccgaggaggcccccggcgtctacaaggacatcgacgaggtgatccgc
gtcagcgacgaactgggaatcggcgacaaggtggcgcggacgttccccgtctgcaatatt
aagggatag
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